Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K16
         (1011 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.26 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 950 PPPPPPXGXXKKKKKK 903
           PPPPPP G  KK+K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 954 PPPPPPPXG 928
           PPPPPPP G
Sbjct: 9   PPPPPPPPG 17


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 954  PPPPPPPXGXXKKK 913
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 955  PPPPPPPXXGXKKK 914
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 954 PPPPPPPXG 928
           PPPPPPP G
Sbjct: 761 PPPPPPPPG 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,955
Number of Sequences: 5004
Number of extensions: 21523
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)