Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K15
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   109   7e-25
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   8.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   8.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   8.2  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  109 bits (261), Expect = 7e-25
 Identities = 54/102 (52%), Positives = 71/102 (69%)
 Frame = +2

Query: 146 KSAINEVVTREYTVNLHXRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 325
           KSAIN+VVTR+YT+++H RL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 326 SKGVRNVPFXXXXXXXXXXNDDEXSAHKLFTLVTYVPVASIK 451
            +G+RNVP           +D++  A  L+T V  V VA+ K
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 319 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKS 200
           E V  S+Y N R  +L ++       CSW +  +S+T  S
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYS 107


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 495 GVYSWLASTFSVCKPLID 442
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 721 TCLLQLIXXTNKAIASXISQIKHFFH 644
           +CL+ L   TN  I   +   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,906
Number of Sequences: 5004
Number of extensions: 37046
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)