Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K09
         (1171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    33   0.076
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.23 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.8  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 517 GGXR--RGGXXGXRRGGXGAGXGGXRGRXPXXRXXGSGGXXG 398
           GG R  RGG  G R GG G G GG RG        G GG  G
Sbjct: 12  GGSRGGRGGFNGGR-GGFGGGRGGARGGGRGGARGGRGGRGG 52



 Score = 30.7 bits (66), Expect = 0.41
 Identities = 19/39 (48%), Positives = 19/39 (48%)
 Frame = -1

Query: 514 GXRRGGXXGXRRGGXGAGXGGXRGRXPXXRXXGSGGXXG 398
           G  RGG  G  RGG G G GG RG     R   SGG  G
Sbjct: 33  GGARGGGRGGARGGRG-GRGGARG----GRGGSSGGRGG 66



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = -3

Query: 473 GWGGGXRXXWSXXXXAPXGFGXXXGXGXXRGGWVGGXXAXRXXAXPXAGGRG 318
           G  GG R           GFG   G G  RGG  GG    R       GGRG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGG--GRGGARGGGRGGARGGRGGRGGARGGRG 58



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 22/66 (33%), Positives = 22/66 (33%)
 Frame = -1

Query: 505 RGGXXGXRRGGXGAGXGGXRGRXPXXRXXGSGGXXGXXXRXXXGLGVXXPGGXXRXXWPG 326
           RGG  G  RGG G G  G RG     R    GG  G       G G    G        G
Sbjct: 8   RGGRGGS-RGGRG-GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65

Query: 325 AVXXGA 308
               GA
Sbjct: 66  GAKGGA 71



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 419 GF-GXXXGXGXXRGGWVGGXXAXRXXAXPXAGGRGXXRXXXXWGXXRVXGGARXGXR 252
           GF G   G G  RGG  GG    R  A    GGRG  R     G     GGA+ G +
Sbjct: 20  GFNGGRGGFGGGRGGARGG---GRGGARGGRGGRGGARGGRG-GSSGGRGGAKGGAK 72


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 517 GGXRRGGXXGXRRGGXGAG-XGGXRGRXPXXRXXGSGGXXG 398
           GG  RGG  G  RGG G G  GG RG     R    GG  G
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRG---GFRGGSRGGFRG 192



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -1

Query: 514 GXRRGGXXGXRRGGXGAGXGGXRGRXPXXRXXGSGGXXG 398
           G  RGG  G  RGG G G  G  G     R    GG  G
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRG--GFGGGSRGGSRGGFRG 184


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -1

Query: 523 RCGGXRRGGXXGXR-RGGXGA--GXGGXRGR 440
           R GG  RGG  G   RGG G   G GG RGR
Sbjct: 444 RTGGGSRGGRGGFGGRGGFGGRGGFGGGRGR 474


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/53 (26%), Positives = 19/53 (35%)
 Frame = +1

Query: 367 PPTXPPRXXPXPXXXPNPXGAXXXXDHXXRXPPPXPPPXAXPXXPRXXSHRSA 525
           PP  PPR  P     P P  +     +    PP  P   A    P   + R++
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +1

Query: 370 PTXPPRXXPXPXXXPNPXGAXXXXDHXXRXPPPXPPPXAXPXXP 501
           P  PP     P   P P G           P P P P   P  P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +3

Query: 303  PXAPXXTAPGXXXRXXPPGXXTPNPXXXRXXXPXXPPEPXXRXXGXRPRXPPXPAPXPP 479
            P  P  T P       PP    P P       P  P  P           PP PA   P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +1

Query: 358  AXXPPTXPPRXXPXPXXXPNPXGAXXXXDHXXRXPPPXPPPXAXPXXP 501
            A  P    P   P P   P P  A          PPP  P  + P  P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/62 (24%), Positives = 18/62 (29%)
 Frame = +1

Query: 319  PRPPAXGXAXXRXAXXPPTXPPRXXPXPXXXPNPXGAXXXXDHXXRXPPPXPPPXAXPXX 498
            P+P          +  PP   P     P   P P              PP PPP   P  
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPV--PAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200

Query: 499  PR 504
            P+
Sbjct: 1201 PK 1202


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +3

Query: 351 PPGXXTPNPXXXRXXXPXXPPEPXXRXXGXRPRXPPXPA 467
           P     P P       P  PP P     G  P  PP PA
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = +1

Query: 319 PRPPAXGXAXXRXAXXPPTXPPRXXPXPXXXPNPXGAXXXXDHXXRXPPPXPPPXA 486
           P PPA        A  P   P      P   P P G           PPP PPP A
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG-----PPPPPPPPPA 784


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +1

Query: 367 PPTXPPRXXPXPXXXPNPXGAXXXXDHXXRXPPPXPPPXAXPXXPRXXSHRS 522
           PPT PP+        P P             PPP   P   P  P   S RS
Sbjct: 243 PPTLPPQST-NTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRS 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.139    0.471 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,197
Number of Sequences: 5004
Number of extensions: 17800
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)