Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K08
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.23 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.39 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 487 SHVLSCVIXLILWITVLPPLSELIPLAA 404
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 599 WRNPTGL*RYQAFPPGXLPRALSCSDPXRLPDTCPPF 709
           + NP    RYQ  P G + R L      RL D  P F
Sbjct: 91  YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSF 127


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 487 SHVLSCVIXLILWITVLPPLSELIPL 410
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 487 SHVLSCVIXLILWITVLPPLSELIPL 410
           S +LS  +  +L   ++PP S  IPL
Sbjct: 286 SILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 487 SHVLSCVIXLILWITVLPPLSELIPL 410
           S ++S  +  +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 487 SHVLSCVIXLILWITVLPPLSELIPL 410
           S ++S  +  +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 487 SHVLSCVIXLILWITVLPPLSELIPL 410
           S +LS  +  +L   ++PP S  +PL
Sbjct: 273 SILLSLTVFFLLLAEIIPPTSLTVPL 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,278
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)