Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K07
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    31   0.28 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    29   1.1  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    27   4.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    27   4.5  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    27   4.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.0  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/82 (21%), Positives = 38/82 (46%)
 Frame = +2

Query: 215 TLQKVKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQ 394
           T   V+    TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR  
Sbjct: 720 TFHFVENPKATIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKS 779

Query: 395 AGFLSAIVGAGLMLMLIATPDN 460
             +   IVG  ++   + TP+N
Sbjct: 780 DPYARVIVGNSVVARTVYTPNN 801


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 301 NWWFQSILKAVDKGLKIYCIHVFFYFLK 218
           NWW++S +     G+ ++   VF++F K
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVFYWFFK 580


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 93  CLFYL*LVKLEYCCCVILKAINIL 164
           CLF L L+ L YC  +++KAI ++
Sbjct: 129 CLFVLLLLGLIYCSKIVVKAIPLI 152


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 93  CLFYL*LVKLEYCCCVILKAINIL 164
           CLF L L+ L YC  +++KAI ++
Sbjct: 129 CLFILLLLGLIYCSKIVVKAIPLI 152


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 93  CLFYL*LVKLEYCCCVILKAINIL 164
           CLF L L+ L YC  +++KAI ++
Sbjct: 129 CLFVLLLLGLIYCSKIVVKAIPLI 152


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 215  TLQKVKKNMNTINFQTFVNSFQNRLEP 295
            TLQ  K N +T NF ++VN +    +P
Sbjct: 2171 TLQVFKSNEDTCNFYSYVNEYGESPKP 2197


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -2

Query: 311 DADELVVPVDSESC*QRFENLLYSC----FFLLSEGSLNNDFNNMIYVILFEV*NIYSF 147
           + D+  +    E C  + EN L+S      FLL   SL+ND +N++ V      NI +F
Sbjct: 386 EIDQTTLRAFGEICTGKLENTLFSNSELNLFLLHYLSLDNDLSNILKVDFQNGHNICTF 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,299
Number of Sequences: 5004
Number of extensions: 58227
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)