Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K07
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    42   5e-04
03_01_0560 + 4162206-4162607                                           30   2.1  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    30   2.7  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 26/84 (30%), Positives = 41/84 (48%)
 Frame = +2

Query: 284 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 463
           ++ P V+ HLK VY TL +   +++ G Y+ +      G L+ +   G +  L + P   
Sbjct: 28  QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86

Query: 464 KNTNLRLGYLLGFGLTSGMSMGPL 535
           +    R G LL   L  G S+GPL
Sbjct: 87  ERK--RFGILLAAALLEGASVGPL 108


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 380 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 529
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 227 VKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFQAGF 403
           +  + N ++    + + +N+     +Q +K + A+L  TC S S   Y D+   R+    
Sbjct: 417 ISSHSNNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKL 476

Query: 404 LSAI 415
           +SAI
Sbjct: 477 ISAI 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,061,391
Number of Sequences: 37544
Number of extensions: 359268
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)