Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K06
         (1073 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.37 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.64 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   6.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.9  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -2

Query: 871 RGGXRXAVGCXXG*RRWXGXXGXGCGXXXXGRGGKEXAE-XXGGGGGGXGXXXXGGXI 701
           RGG     G   G R   G  G G G    GRGG+  A    GG  GG G    G  +
Sbjct: 18  RGGFNGGRGGFGGGR--GGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKV 73


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 755 LRALLPXPPXXXXPTTXPXP-PXPPPSP 835
           L++  P PP    PT  P P P PPP+P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 29.9 bits (64), Expect = 0.64
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 731 PXPTPSXXLRALLPXPPXXXXPTTXPXPPXPPP 829
           P P P+  +    P PP        P PP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 2/90 (2%)
 Frame = +2

Query: 572 PT*SLPAIIXPXXPTLXLXXXPXPXTTPXXPXSXRXRPHXXXXDXPPXXRXXXPXPTPSX 751
           P  ++P    P  P L           P  P      P       PP      P   P  
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 752 XLRALLPXPPXXXX--PTTXPXPPXPPPSP 835
               + P  P      P   P  P PPP+P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/61 (26%), Positives = 20/61 (32%)
 Frame = +2

Query: 653 PXXPXSXRXRPHXXXXDXPPXXRXXXPXPTPSXXLRALLPXPPXXXXPTTXPXPPXPPPS 832
           P  P S R R      +         P P P       +P PP      + P PP P  +
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG---RSAPPPPPPRSA 369

Query: 833 P 835
           P
Sbjct: 370 P 370


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/74 (24%), Positives = 22/74 (29%)
 Frame = +2

Query: 611  PTLXLXXXPXPXTTPXXPXSXRXRPHXXXXDXPPXXRXXXPXPTPSXXLRALLPXPPXXX 790
            P+      P P T P  P      P        P      P P PS  + ++        
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSA--PPPVPAPSSEIPSIPAPSGAPP 1084

Query: 791  XPTTXPXPPXPPPS 832
             P     PP P PS
Sbjct: 1085 VPAPSGIPPVPKPS 1098


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = -2

Query: 781 GRGGKEXAEXXGGGG-GGXGXXXXGGXIXXXXVGAGXVGXXXSGSRXWXWGXXEGESR 611
           GRGG+       GG  GG G    GG       G G  G    GSR    G   G SR
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGF------GGGSRGGFGGGSRGGSRGGFRGGSR 187


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 770 PXPPXXXXPTTXPXPPXPP 826
           P PP    P + P PP PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,984
Number of Sequences: 5004
Number of extensions: 21829
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)