Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_K05
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 233 2e-62
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 152 7e-38
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 144 1e-35
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 4e-21
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 6e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 6e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 2e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 4e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 53 6e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.008
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.096
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.17
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.17
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.67
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.6
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.6
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 3.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.6
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 4.8
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 6.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 233 bits (571), Expect = 2e-62
Identities = 111/133 (83%), Positives = 119/133 (89%)
Frame = +2
Query: 497 PSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 676
P P++NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEG
Sbjct: 109 PLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEG 168
Query: 677 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKLCYVALDFXQEMA 856
YALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TT EREIVRDIKEKLCYVALDF QE+
Sbjct: 169 YALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQ 228
Query: 857 TXXSXXSLXKSYE 895
T SL KSYE
Sbjct: 229 TAAQSSSLEKSYE 241
Score = 157 bits (380), Expect = 3e-39
Identities = 69/81 (85%), Positives = 72/81 (88%)
Frame = +1
Query: 283 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 462
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 463 PEEHPVLLTEAPLNPKGQQRE 525
PEEHP LLTEAPLNPK + +
Sbjct: 98 PEEHPCLLTEAPLNPKSNREK 118
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +2
Query: 191 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 280
LV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 152 bits (368), Expect = 7e-38
Identities = 82/235 (34%), Positives = 123/235 (52%)
Frame = +2
Query: 191 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGKAPPSGX*WSVWDRRTLM*EMRHRAKXXXXX 370
+ +DNGSG KAGFAGDD P+ +FP+ G+ S + + +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 371 XXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPSTPRANREKMTQIMFET 550
+ I S + P P N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 551 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 730
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 731 DYLMKILTERGYSFTTTXEREIVRDIKEKLCYVALDFXQEMATXXSXXSLXKSYE 895
DYL L + G+ ++ E+EIVR+IKEK CYVA DF E+ + +Y+
Sbjct: 192 DYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQ 246
Score = 82.2 bits (194), Expect = 9e-17
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +1
Query: 298 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 474
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 475 PVLLTEAPL 501
P+LLTE PL
Sbjct: 107 PLLLTEPPL 115
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 144 bits (349), Expect = 1e-35
Identities = 69/143 (48%), Positives = 92/143 (64%)
Frame = +2
Query: 464 PRNTQSCSLRLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 643
PR + P P ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 644 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKLC 823
GV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F T + E VR++KEKLC
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLC 217
Query: 824 YVALDFXQEMATXXSXXSLXKSY 892
YV+ D + L ++Y
Sbjct: 218 YVSYDLELDHKLSEETTVLMRNY 240
Score = 75.4 bits (177), Expect = 1e-14
Identities = 28/63 (44%), Positives = 48/63 (76%)
Frame = +1
Query: 319 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 498
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 499 LNP 507
+NP
Sbjct: 110 MNP 112
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 191 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 280
+V+DNG+G K G+A D+ PR FPS G+
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 96.7 bits (230), Expect = 4e-21
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Frame = +2
Query: 497 PSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVS 652
P P NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Query: 653 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKLCYVA 832
H +P+ EGY + +I + LAGRD+T ++ +L +R ++ E IKE+ CYV
Sbjct: 192 HIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAE---RIKEECCYVC 248
Query: 833 LDFXQEMA 856
D +E +
Sbjct: 249 PDIVKEFS 256
Score = 68.9 bits (161), Expect = 9e-13
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 322 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 498
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 499 LNPKGQQRED 528
LNP + RE+
Sbjct: 133 LNPP-ENREN 141
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 191 LVVDNGSGMCKAGFAGDDAPRAVFPS 268
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 59.7 bits (138), Expect = 6e-10
Identities = 27/77 (35%), Positives = 49/77 (63%)
Frame = +2
Query: 623 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVR 802
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 803 DIKEKLCYVALDFXQEM 853
+IKE +CYV+ +F ++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 59.7 bits (138), Expect = 6e-10
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Frame = +2
Query: 482 CSLRLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSH 655
C + P R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH
Sbjct: 119 CMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASH 178
Query: 656 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKLCYVAL 835
+P+ G + R+ G + YL+K+ + SF + C+V+
Sbjct: 179 VIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSS 238
Query: 836 DFXQEMA 856
D+ ++A
Sbjct: 239 DYTHDIA 245
Score = 42.3 bits (95), Expect = 9e-05
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 310 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 486
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 487 TEAPLNP 507
TE NP
Sbjct: 121 TEPLANP 127
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 191 LVVDNGSGMCKAGFAGDDAPRAVF 262
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.6 bits (133), Expect = 2e-09
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 2/199 (1%)
Frame = +2
Query: 182 LPRLVVDNGSGMCKAGFAGDDAPRAVFPSNRG-KAPPSGX*WSVWDRRTLM*EMRHRAKX 358
+P LV+D GS + G+AG+++P + PS G ++ +G V D L
Sbjct: 10 IPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRNKYVVDE--LQIHAPIPGME 67
Query: 359 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPS-TPRANREKMTQ 535
T TW R G+ V+P + + PS P++ R+++ +
Sbjct: 68 VKNGKSNGIIQDWESTLYTWER-GLKEKLQ--VNP--TEYAMMITEPSWNPQSVRQQIME 122
Query: 536 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 715
FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I + LA
Sbjct: 123 AAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLA 182
Query: 716 GRDLTDYLMKILTERGYSF 772
G L + ++ F
Sbjct: 183 GDFLNANIEQLFNTMNIEF 201
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 283 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 456
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 457 VAPEEHPVLLTEAPLNPKGQQRE 525
V P E+ +++TE NP+ +++
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQ 119
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.6 bits (123), Expect = 4e-08
Identities = 31/100 (31%), Positives = 49/100 (49%)
Frame = +2
Query: 515 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 694
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 695 ILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKE 814
+L L GR +T +L +L E + ++ + DI E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
Score = 25.8 bits (54), Expect = 8.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 379 PIEHGIVTNWDDMEKIWHHTF 441
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 52.8 bits (121), Expect = 6e-08
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +2
Query: 506 PRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 685
P NR K + MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 110 PPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Query: 686 PHAILRLDLAGRDLTDYLMKILTERGY 766
+G + D L + L ++ +
Sbjct: 170 QKGYQVQHFSGNAINDILAQTLRDKNF 196
Score = 42.7 bits (96), Expect = 7e-05
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 364 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 507
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Score = 33.1 bits (72), Expect = 0.055
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 191 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 280
+V+D GS + GF+G+D P+ V PS G+
Sbjct: 14 IVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/84 (20%), Positives = 42/84 (50%)
Frame = +2
Query: 521 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 700
EK+ I+F + + +++ + + +G + V+D G + + EG +P++ +
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 701 RLDLAGRDLTDYLMKILTERGYSF 772
+++ G D+T MK+L + +
Sbjct: 320 KINYGGDDITLLFMKLLMRSHFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.096
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 564 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 698
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 561 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 698
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Frame = +3
Query: 462 PRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPV--VPPVSCWT 635
P G P P P P PP +PS +P VPPV
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP--P 1193
Query: 636 PATVSPTPCPSTKDTHSPTPS 698
P+ P P PS P PS
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPS 1214
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 561 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 698
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 537 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 698
SC+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 30.3 bits (65), Expect = 0.39
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 537 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 698
SC+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +3
Query: 471 TPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVS 650
T P S P PT P S S ST PP S S + + + SC T ++
Sbjct: 343 TSIPPTGNSTTPVTPTVP--PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Query: 651 PTPCPSTKDTHSPTPS 698
PT +T T + P+
Sbjct: 401 PTGNSTTPVTPTVPPT 416
Score = 28.3 bits (60), Expect = 1.6
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +3
Query: 462 PRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTP 638
P T S SP P T SC+ ++ P T S S P VPP S T
Sbjct: 209 PTSTSSTDTNSSPLPTTST------SCTTSTSIP--TGGSSSLSTPITPTVPPTSTSSTS 260
Query: 639 ATVSPTPCPSTKDTHSPTPS 698
+ PT ST SP P+
Sbjct: 261 IPIPPTSTSSTDTNSSPLPT 280
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 537 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPC-PSTKDTHSPTP 695
SC+ ++ PP + + P + P VPP S TP T T C ST ++ TP
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTT--TNCTTSTSVPYTSTP 439
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = +3
Query: 471 TPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVS 650
T P S P PT P S S ST PP S S + + SC T ++
Sbjct: 289 TSIPPTGNSTTPVTPTVP--PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346
Query: 651 PTPCPSTKDTHSPTPS 698
PT +T T + P+
Sbjct: 347 PTGNSTTPVTPTVPPT 362
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.5 bits (68), Expect = 0.17
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 462 PRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTP 638
P + SPA+ S PT + +S P SP+ P T P P S ++P
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSP 1622
Query: 639 ATVSPTPCPSTKDTHSPT 692
+ S +P T ++SPT
Sbjct: 1623 TSPSYSP---TSPSYSPT 1637
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 477 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSP 653
SP++ + PT + +S P SP+ P T P P S ++P + S
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662
Query: 654 TPCPSTKDTHSPT 692
+P T ++SPT
Sbjct: 1663 SP---TSPSYSPT 1672
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 477 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSP 653
SP++ + PT + +S P SP+ P T P P S ++P + S
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648
Query: 654 TPCPSTKDTHSPT 692
+P T ++SPT
Sbjct: 1649 SP---TSPSYSPT 1658
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 477 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSP 653
SP++ + PT + +S P SP+ P T P P S ++P + S
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683
Query: 654 TPCPSTKDTHSPT 692
+P T ++SPT
Sbjct: 1684 SP---TSPSYSPT 1693
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 477 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSP 653
SP++ + PT + +S P SP+ P T P P S ++P + S
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704
Query: 654 TPCPSTKDTHSPT 692
+P T ++SPT
Sbjct: 1705 SP---TSPSYSPT 1714
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 477 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSP 653
SP++ + PT + +S P SP+ P T P P S ++P + S
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725
Query: 654 TPCPSTKDTHSPT 692
+P T ++SPT
Sbjct: 1726 SP---TSPSYSPT 1735
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 585 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 689
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 480 PAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRC 599
P G+P P P P+SC + C S+PC C
Sbjct: 632 PVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPC 671
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/76 (26%), Positives = 29/76 (38%)
Frame = +3
Query: 468 GTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATV 647
G +PAH S P P P+ + PP + P P + PP+ P +
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA-------PPMPA-GPPSA 1730
Query: 648 SPTPCPSTKDTHSPTP 695
P P P++ P P
Sbjct: 1731 PPPPLPASSAPSVPNP 1746
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 585 PCSRCTRPVVPPVSCWTPATVSPTPCPST 671
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 488 LRLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 649
+R S PR E ++I F + Y+AI A+L +YA R +++ G GV
Sbjct: 38 VRRISRPRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGV 91
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 531 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 689
P S S+ + PP P+ P + P +PP+ + + P P P + +P
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGR--SAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -2
Query: 606 DAYSESTAWMATYMAGVLNVSNMIWVIFSLLALGVEGSLSEQDWVF 469
D + W+ A + +++ IF L G EG++ + WVF
Sbjct: 2066 DTVAPGRVWITNVAAWIYAIASASGSIFFSLNFGEEGAVQTRIWVF 2111
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 561 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 668
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 4.8
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 426 LASYLLQ*AACRPRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTR 605
+AS LL A + +G PSPA S P++ S T+ T S P S T
Sbjct: 498 VASPLLHLLASKSQGLPSPATTDSNTHMLPSQGSLLPPSSISETKSFSTKASTPLS--TD 555
Query: 606 PVVPPV-SCWTPATVSPTPCPSTKDTHSPTPS 698
+ P+ S P +V PT T +HS S
Sbjct: 556 DIATPLSSAPNPPSVMPTYARKT-SSHSERSS 586
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 601 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 753
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 462 PRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSK--PCSRCTRPVVPPVSCWT 635
P P+P +P P P + ++ S +TRP T+P K + +PV P +
Sbjct: 893 PAPIPAPVAEPAP-PAAPAKEVVEKAPSPPATRPKSTTPQKFDDDAWANKPVTEPPVRAS 951
Query: 636 PATVSP 653
TV P
Sbjct: 952 SVTVEP 957
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,519
Number of Sequences: 5004
Number of extensions: 74426
Number of successful extensions: 320
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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