Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K02
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565...    47   2e-05
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429...    33   0.29 
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193...    29   3.5  
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150...    29   3.5  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    28   8.2  

>06_03_1396 +
           29855256-29855328,29856019-29856180,29856466-29856516,
           29857189-29857277,29857632-29857709,29857811-29858014,
           29858101-29858172,29858262-29858306
          Length = 257

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
 Frame = +3

Query: 258 IEGEDNQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGF 437
           ++G D  +V DD  V  D   +  +  ++T  +F K    +      + AG   E  VG 
Sbjct: 40  VDGADLGIVSDDTQVSSD-GPLSPAPGVETVCVFPKNAGKI------VLAGEETELLVGL 92

Query: 438 INKGSVXYVVESMEASFRYPMDYTYYIQNFTALP-YNRXVXPXQEATFAYSFIPNEXXAG 614
            N+G     V ++ ++   P D+  Y QN T    +N  V    +ATF Y+F  ++    
Sbjct: 93  QNEGESTLNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATFPYTFAVSKFLQP 152

Query: 615 XPFGLXVQLNYXXAXGXAYXXXVYNXTL 698
             + L   + Y       Y    YN T+
Sbjct: 153 GAYDLVGYIVYEIDQN-PYQNVFYNGTV 179


>10_02_0022 -
           4290708-4290788,4291254-4291305,4291396-4291484,
           4291565-4291615,4291699-4291893,4292010-4292090,
           4292190-4292252,4292480-4292554,4292630-4292710,
           4292784-4292888,4292977-4293057,4293156-4293242,
           4293322-4293369,4293923-4293987,4294109-4294172,
           4294828-4294896
          Length = 428

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +3

Query: 264 GEDNQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 407
           GE  Q+VGDD LV +   V K+ Q+     L  K V  +G +T  I+A
Sbjct: 322 GEQVQIVGDDLLVTNPTRVAKAIQEKSCNALLLK-VNQIGSVTESIEA 368


>06_01_0262 -
           1930552-1930632,1931096-1931152,1931236-1931287,
           1931373-1931461,1931551-1931601,1931696-1931890,
           1932015-1932095,1932205-1932267,1933045-1933119,
           1933194-1933352,1933353-1933463,1933536-1933616,
           1933721-1933807,1933920-1933967,1934357-1934421,
           1935002-1935065,1935220-1935288
          Length = 475

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 264 GEDNQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 407
           G+  Q+VGDD LV +   V K+  +     L  K V  +G +T  I+A
Sbjct: 350 GQQVQIVGDDLLVTNPTRVAKAISEKTCNALLLK-VNQIGSVTESIEA 396


>04_03_0818 +
           20014685-20014687,20014792-20014831,20014988-20015025,
           20015359-20015485,20015571-20015797,20015919-20016064,
           20016166-20016284,20016711-20016799,20016881-20017003,
           20017123-20017158,20017464-20017562,20017642-20017833
          Length = 412

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = +3

Query: 264 GEDNQVVGD--DALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGF 437
           G+ N+  GD  D + + D +     +DI   +++ +      D  FD   GY  +F   +
Sbjct: 144 GKGNESTGDNFDGVPNIDHTQPFVRKDIIDWLIWLRESIGFQDFRFDFTKGYAAKFVKEY 203

Query: 438 INKGSVXYVVESMEASFRY-PMDY 506
           I +    + V     S  Y P DY
Sbjct: 204 IEQSKPLFAVGEYWDSCEYSPPDY 227


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 276 QVVGDDALVDDDESVVKSSQDIDT-TILFTKPVPSLGDLTFD-IQAGYPVEFFVGFINK 446
           +V+G + L+D    + K  +D+D  TI   +  P       D I++ Y  EFF+GF+ +
Sbjct: 81  EVLGGNELIDSQIDI-KFGRDVDKGTICSIELDPDKAKQLSDAIESSYWFEFFIGFVGE 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,933
Number of Sequences: 37544
Number of extensions: 242726
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)