Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_K01
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    31   0.22 
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    31   0.22 

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +1

Query: 133 PXVLARVVKVLGRTGSXGPV 192
           P  LA+V+KVLGRTGS G V
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV 26



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 194 TXVXVXFXGXXXRXIXRNVXGPVRDGXXL 280
           T V V F     R I RNV GPVR+   L
Sbjct: 27  TQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +1

Query: 133 PXVLARVVKVLGRTGSXGPV 192
           P  LA+V+KVLGRTGS G V
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV 26



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 194 TXVXVXFXGXXXRXIXRNVXGPVRDGXXL 280
           T V V F     R I RNV GPVR+   L
Sbjct: 27  TQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,141,418
Number of Sequences: 5004
Number of extensions: 10000
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)