Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J24
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.32 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +2

Query: 686 PPPXXXPQKTPPPXXXAAPXPPRXQPXTPXXXPPXKPPXXXP 811
           P P   P ++P      +P  P   P  P   PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP--PPGGPPGAPPSQNP 60



 Score = 26.2 bits (55), Expect = 0.42
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +2

Query: 716 PPPXXXAAPXPP-RXQPXTPXXXPPXKPPXXXPPXPPP 826
           P P    +P  P R  P  P   PP   P   PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 577 GKXXXPPXGGXXPPPPPXXRGP 512
           G    PP     PPPPP   GP
Sbjct: 333 GDSDTPPKPAP-PPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 794 PPXXXPPXPPP 826
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.147    0.514 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,814
Number of Sequences: 438
Number of extensions: 5527
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)