Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J23
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    63   4e-11

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 47/172 (27%), Positives = 62/172 (36%), Gaps = 4/172 (2%)
 Frame = +3

Query: 66  HPFHLVXXXPXPFTGAXGVLXXXXGXXXXFXXFXFNLIIIGXXXT--LLTAYQ*XRXXSR 239
           HP+H+V   P PF  +  +             +  + +  G      L T Y   R  S 
Sbjct: 14  HPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFRDMST 73

Query: 240 XGXYQGKXTILVNXGXRXGXXLXXXXXXXXXXXXXXXXXHRXXSPNIEXGXXXPPSRITP 419
                G  T  V  G + G  L                 H   SP  E G   PP  I  
Sbjct: 74  EANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIAD 133

Query: 420 --FNPFXXPLLXTIILIXSGVXVX*AXXSLIENNFSQTKQRLFLTILLGFYF 569
              +P   PLL T+IL+ SG  +  A  SLI  N     + L++TI L F F
Sbjct: 134 KTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLF 185



 Score = 33.5 bits (73), Expect = 0.041
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 601 ASFTXADXLXGSTXFIXPGFHGIHVILG 684
           A FT +D + G++ +   G HGIH+I+G
Sbjct: 196 APFTISDSVYGASFYFATGLHGIHIIVG 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,617
Number of Sequences: 5004
Number of extensions: 9978
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)