Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J22
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 210 8e-55
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 198 5e-51
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 198 6e-51
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 195 3e-50
01_01_0719 - 5590272-5590485,5590849-5590910,5590990-5591202,559... 29 4.7
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 28 8.3
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 210 bits (514), Expect = 8e-55
Identities = 93/151 (61%), Positives = 116/151 (76%)
Frame = +2
Query: 125 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 304
A + ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPF
Sbjct: 42 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPF 101
Query: 305 FPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGS 484
F GL ++SSGPV+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNIIHGS
Sbjct: 102 FNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 161
Query: 485 DSVESAKKEIGLWFTDKEVVGWTPANENWVY 577
D E+AK EIGLWF +E+V +T E W+Y
Sbjct: 162 DGPETAKAEIGLWFEPRELVSYTSNEEKWIY 192
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 198 bits (483), Expect = 5e-51
Identities = 86/148 (58%), Positives = 113/148 (76%)
Frame = +2
Query: 137 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 316
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 317 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 496
V+Y+ SGPVV MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IHGSDSVE
Sbjct: 64 VEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVE 123
Query: 497 SAKKEIGLWFTDKEVVGWTPANENWVYE 580
+A+KEI LWF + + W W+YE
Sbjct: 124 NARKEIALWFPE-GIAEWRSNQHPWIYE 150
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 198 bits (482), Expect = 6e-51
Identities = 88/148 (59%), Positives = 113/148 (76%)
Frame = +2
Query: 137 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 316
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 317 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 496
V+Y+ SGPVV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IHGSDSV+
Sbjct: 62 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVD 121
Query: 497 SAKKEIGLWFTDKEVVGWTPANENWVYE 580
+ KKEI LWF + + W W+YE
Sbjct: 122 NGKKEIALWFPE-GLAEWRSNLHPWIYE 148
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 195 bits (476), Expect = 3e-50
Identities = 84/148 (56%), Positives = 111/148 (75%)
Frame = +2
Query: 137 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 316
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 317 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 496
++Y++SGPVV M WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++HGSDS +
Sbjct: 63 IEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPD 122
Query: 497 SAKKEIGLWFTDKEVVGWTPANENWVYE 580
+ K+EI LWF + E+ W W+ E
Sbjct: 123 NGKREIALWFKEGELCEWESVLTPWLVE 150
>01_01_0719 -
5590272-5590485,5590849-5590910,5590990-5591202,
5591223-5591295,5591664-5591863,5592484-5592633
Length = 303
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 58 FKSFAGCGARVVNLST 105
F FAGCGA VVNLST
Sbjct: 60 FMIFAGCGAVVVNLST 75
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 387 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGRDAKSL*CCWRS--SSDGHTNFKPTSLKP 217
RP S+T + P+ +RPGK+G DA+S+ S S T +P S KP
Sbjct: 529 RPFCPCASRSNTDASLHPQTENGSRPGKRGNDAESVPGTNGSDLSQTDDTEARPCSKKP 587
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,129
Number of Sequences: 37544
Number of extensions: 336057
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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