Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J20
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    56   9e-09
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    37   0.004
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.6  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   6.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   6.1  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   8.0  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
 Frame = +2

Query: 209 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 376
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+     +L G     +A+V Q+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96

Query: 377 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAXLKVLDGHLLTRTFLVTXRIT 556
            S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+LV  R+T
Sbjct: 97  CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156

Query: 557 L 559
           L
Sbjct: 157 L 157


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
 Frame = +2

Query: 215 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA------NESLRGGDLATQARVWQW 376
           S D   KFP  K+P F  ADG  L      + Y+         E L   +   +A + +W
Sbjct: 40  SADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKW 99

Query: 377 ASWSDSELL-PASC-AWVFPYLGIMQFNKQNVERAKSDLLAXLKVLDGHLLTRTFLVTXR 550
             + + +++ P +   WV  + G + + ++  + + +  +  LK+ +  +  RT+LV  R
Sbjct: 100 MCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDR 159

Query: 551 ITL 559
            TL
Sbjct: 160 FTL 162


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 345 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 440
           +W+P PV  SG    T+  C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 285 STFPSALSNAGTFPAGNFFKKSSDL 211
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 296 SNAIAYYVANESLRGGDLATQARVWQWAS 382
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 393 VNYCLLPVLGSSLTLVSCNSTNRML 467
           V + L+P LG  L + SCN+  R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,352
Number of Sequences: 5004
Number of extensions: 44672
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)