Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J20
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 91 1e-18
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 89 3e-18
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 43 4e-04
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 38 0.010
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 35 0.097
03_01_0249 - 1935355-1935827,1936129-1936330 34 0.17
11_06_0584 - 25220371-25222917 31 1.2
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 30 2.1
02_04_0633 - 24616563-24617279 30 2.8
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 6.4
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 91.1 bits (216), Expect = 1e-18
Identities = 57/147 (38%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Frame = +2
Query: 131 ASQALIAAQSSGXXVXVAPNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIA 310
A +ALIAA+ +G V + NF G NK+ +FLK P GK+P E+ +G V ESNAIA
Sbjct: 38 AFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVF--ESNAIA 95
Query: 311 YYVA----NESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAK 478
YVA N SL G L + + QW +S +E+ W++P LG + E A
Sbjct: 96 RYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAI 155
Query: 479 SDLLAXLKVLDGHLLTRTFLVTXRITL 559
+ L L L+ HL + T+LV +TL
Sbjct: 156 TSLKRSLGALNTHLASNTYLVGHSVTL 182
>02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 89.4 bits (212), Expect = 3e-18
Identities = 60/156 (38%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Frame = +2
Query: 131 ASQALIAAQSSGXXVXVAPNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIA 310
A +ALIAA+ SG V +A NF G NK+ ++LK P GKVP E+ DG V ESNAIA
Sbjct: 575 AFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVF--ESNAIA 632
Query: 311 YYVANES-------------LRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQF 451
YV + S L G L A + QW +S +E+ + W+FP LG +
Sbjct: 633 RYVLSSSHFPEVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPY 692
Query: 452 NKQNVERAKSDLLAXLKVLDGHLLTRTFLVTXRITL 559
+ E A + L L L+ HL + T+LV +TL
Sbjct: 693 VAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTL 728
Score = 87.8 bits (208), Expect = 1e-17
Identities = 59/156 (37%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Frame = +2
Query: 131 ASQALIAAQSSGXXVXVAPNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIA 310
A +ALIAA+ SG V + NF G NK+ +FLK P GK+P E+ DG V ESNAIA
Sbjct: 14 AFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVF--ESNAIA 71
Query: 311 YYV-------------ANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQF 451
YV A+ L G L A + QW +S +E+ W++P LGI +
Sbjct: 72 RYVLSHCHFPEVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPY 131
Query: 452 NKQNVERAKSDLLAXLKVLDGHLLTRTFLVTXRITL 559
+ E A + L L L+ HL + T+LV +TL
Sbjct: 132 VAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTL 167
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 42.7 bits (96), Expect = 4e-04
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +2
Query: 143 LIAAQSSGXXVXVAPNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA 322
L+ + +G + + N+S L + P GK+PAFE DG+V L ES AI YV
Sbjct: 18 LVCLEEAGASYELVAVDMAAGENRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYVL 75
Query: 323 N-----ESLRGGDLATQARVWQW 376
+ LR G+L A V W
Sbjct: 76 RNYNKPDLLREGNLEESAMVDMW 98
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 37.9 bits (84), Expect = 0.010
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = +2
Query: 143 LIAAQSSGXXVXVAPNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV- 319
L+ + G V P + +K + + P G+VPAFE DG + L ES AI+ Y+
Sbjct: 19 LVCLEEVGAEYEVVPVDMSTGEHKRPPHISRNPFGQVPAFE--DGDLTLFESRAISKYIL 76
Query: 320 ---ANESLRGGDLATQARVWQWASWSDSELLPASCAWVF 427
++ LR +L+ A V W S A +F
Sbjct: 77 RKHGSDLLRESNLSESAMVDVWLEVESSHFDGAMSPIIF 115
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 34.7 bits (76), Expect = 0.097
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +2
Query: 209 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANES--------LRGGDLATQAR 364
+K D L + P G+VPAF+ DG ++L ES AI Y+ + LR GD + A
Sbjct: 41 HKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICRYILRKHRATDEANLLREGDPSESAV 98
Query: 365 VWQW 376
V W
Sbjct: 99 VDAW 102
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 209 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQAR 364
+KS FLK P G+VPAF+ D + ES AI Y+ ++ G+ R
Sbjct: 42 HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRYICDQYADSGNKTLMGR 91
>11_06_0584 - 25220371-25222917
Length = 848
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 549 LSVTRKVRVRRCPSSTFKXASRSDFARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 385
+++ + R R P + R + +ST C C +PR K +AG S+++D
Sbjct: 386 INIRKTARRRELPQKQHQHKLR--WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -3
Query: 164 RKIVRRSTLEKRGXLPGEVERTPGRQGG 81
RK VR L +RG P E ER PG GG
Sbjct: 28 RKGVRLRMLRRRGRQPVEAERAPGDGGG 55
>02_04_0633 - 24616563-24617279
Length = 238
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 300 MPSLTTLPMKVSAEEIWLPKPVSGSGHHGLTVNYC 404
MP+ TT+ M+ S + W P+ G HG VN+C
Sbjct: 1 MPAATTIQMEASPADHWSPRHRRRCGCHG--VNWC 33
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 224 FLKKFPAGKVPAFESADGK 280
FLK P GKVP F DGK
Sbjct: 49 FLKISPEGKVPVFNGGDGK 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,632,459
Number of Sequences: 37544
Number of extensions: 336691
Number of successful extensions: 832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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