Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J20
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 62 4e-10
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 54 2e-07
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 48 9e-06
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 31 0.81
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 31 0.81
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 31 0.81
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical pr... 29 5.7
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 28 7.5
L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical pr... 28 7.5
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 28 7.5
Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical pr... 28 10.0
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 62.5 bits (145), Expect = 4e-10
Identities = 47/145 (32%), Positives = 73/145 (50%)
Frame = +2
Query: 125 FRASQALIAAQSSGXXVXVAPNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNA 304
FR + LIAA+ + V +A G ++ KFP G PAFE G LL + +
Sbjct: 12 FRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---GDALLFGAES 59
Query: 305 IAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSD 484
I ++ S A QW +++ LLPA +V P + F+K+ VE+ K++
Sbjct: 60 IGLHLTGTS-------ANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNE 112
Query: 485 LLAXLKVLDGHLLTRTFLVTXRITL 559
L L+VLD L+ +T+LV R++L
Sbjct: 113 LNGQLQVLDRVLVKKTYLVGERLSL 137
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/89 (31%), Positives = 49/89 (55%)
Frame = +2
Query: 293 ESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVER 472
E +A+ + + L + A QW +++ LLPA +V P + F+K+ VE+
Sbjct: 24 EGDALLFGAESIGLHLTGTSANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQ 83
Query: 473 AKSDLLAXLKVLDGHLLTRTFLVTXRITL 559
K++L L+VLD L+ +T+LV R++L
Sbjct: 84 YKNELNGQLQVLDRVLVKKTYLVGERLSL 112
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 48.0 bits (109), Expect = 9e-06
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +2
Query: 125 FRASQALIAAQSSGXXVXVAPNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNA 304
FR + LIAA+ + V +A G ++ KFP G PAFE G LL + +
Sbjct: 12 FRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---GDALLFGAES 59
Query: 305 IAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSD 484
I ++ S A QW +++ LLPA +V P + F+K+ VE+ K++
Sbjct: 60 IGLHLTGTS-------ANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNE 112
Query: 485 LLAXLK-VLDGH 517
L L+ VLD +
Sbjct: 113 LNGQLQYVLDAN 124
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 182 APNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQA 361
+P+F+ +++ LK P +P + KVL T + + +Y+ E + LA Q
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELI----LAVQH 1084
Query: 362 RVWQ 373
++WQ
Sbjct: 1085 QIWQ 1088
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 182 APNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQA 361
+P+F+ +++ LK P +P + KVL T + + +Y+ E + LA Q
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELI----LAVQH 1084
Query: 362 RVWQ 373
++WQ
Sbjct: 1085 QIWQ 1088
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 182 APNFVFGXXNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQA 361
+P+F+ +++ LK P +P + KVL T + + +Y+ E + LA Q
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELI----LAVQH 1084
Query: 362 RVWQ 373
++WQ
Sbjct: 1085 QIWQ 1088
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 332 DFHWQRSKRWHCFQLGALFHRHFRMQALFRQETSSR-SLRTCWXRQIRNSV 183
DF W+RSK W Q ++ R SS+ S+ TC IR++V
Sbjct: 153 DFDWKRSKEWQFMQQFTKTETPIPFTSIARATLSSKHSIITCITDHIRHAV 203
>Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical
protein T24D5.5 protein.
Length = 408
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 323 WQRSKRWHCFQLGALFHRHFRMQALFRQETSSRSLRTCWXRQIRNSV 183
W+R +R H ++G+ RHF+ + + SL CW R + V
Sbjct: 304 WKRYQRKH--KMGSEETRHFKGSSSLSNMNAQSSLMVCWKRSTDDRV 348
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 380 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAXL 499
S+ ++ +L A C W + + + +K+NV + KS L+ L
Sbjct: 298 SFEENAILKALCCWQTAHFKLEECDKENVRKQKSLLVQCL 337
>L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical
protein C02D5.3c protein.
Length = 254
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 212 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 319
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 62 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 97
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 212 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 319
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 345 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 380
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 224 FLKKFPAGKVPAFESADGKVLLTESNAIAYYV 319
+L K P G+VPA E +GKV + ESN I Y+
Sbjct: 138 YLPKSPIGRVPALE-INGKV-VWESNVIVEYL 167
>Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical
protein F13A7.10 protein.
Length = 254
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 212 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 319
K + + K G+VP E A+GK L+ ES I Y+
Sbjct: 62 KPDWYFTKNYKGQVPTLEHAEGKKLVIESAVIPEYL 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,437,337
Number of Sequences: 27780
Number of extensions: 265504
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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