Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J15
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    31   0.16 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    31   0.16 
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.84 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    29   1.1  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.0  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   6.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   7.9  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +2

Query: 35  GPSLRLLXCSLETRSE--KAPNKMKLLVVFAMCVLAASAGVVELSADSMSPSNQDLEDKL 208
           G   +   C +E RS   +  N+    +   + V+ A+AG+  +   S+   N+D+  K+
Sbjct: 58  GVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIA-IPHLSLEDKNEDIWTKV 116

Query: 209 YNSILTGDYDSAVRKSLEYESQGQGSIV 292
               L G Y +A      ++ QG+GS++
Sbjct: 117 VGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 143 AGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLE 262
           A +V+ S    +P + DLE  +  ++LTGD  SAV+  LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 262 FQALTYSTVVVTGEDAVVQFVLEVLV 185
           F  +T   V+V  EDAVV+FVL +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/59 (18%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 284 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFR--THHGRKLRQAHLQK 454
           +I+   V+N I+D+  +  ++C ++W G     ++ ++   ++  +H   K    H+++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRR 305


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 522 TADAPEPRK*IAASPAKTASELPAQTSKP 608
           T+  P+     AA+PA T +  PAQTS P
Sbjct: 108 TSSTPKVETAAAAAPAATPAPAPAQTSAP 136


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +3

Query: 147 ASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTR 326
           AS +   T  A  T +S ++  ++S+P+T++     A +  A + +A +     + S T 
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287

Query: 327 DGTPWSTATS 356
             TP S+A S
Sbjct: 288 SSTPLSSANS 297


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
 Frame = +3

Query: 132 SPPAPASWNYPRTA*ALLTKTSRTNCTTASS---------PVTTTVLYVRAWNTRAKARA 284
           +PP PAS +   T+ + L  TS T+CTT++S         PVT TV      +T      
Sbjct: 315 TPPPPASTSSTGTSSSPLPSTS-TSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 373

Query: 285 ASFKM*LTI*SLTRDGTPWSTATSCGSAT 371
           AS     T  + T      ST+TSC ++T
Sbjct: 374 AS-----TSSTGTSSSPLLSTSTSCTTST 397



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 132 SPPAPASWNYPRTA*ALLTKTSRTNCTTASS 224
           +PP PAS +   T+ + L  TS T+CTT++S
Sbjct: 369 TPPPPASTSSTGTSSSPLLSTS-TSCTTSTS 398


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +2

Query: 155 ELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRN 334
           E+     S  N  LE          D D   R ++  + Q    +++++  NL I    N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462

Query: 335 TMEYCYKLWVGNGQDIVK 388
            +EY   LW  NG  I K
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +2

Query: 155 ELSADSMSPSNQDLEDKLYNSILTGDYDS------AVRKSLEYESQGQGSIVQNVVNNL 313
           ELS +S++  N D+  +++  I + D         A+ K +E+ES+G  + +    N L
Sbjct: 32  ELSGESLARFNNDINRRIFELIHSHDSHERFGGILAIGKLIEFESEGDVTNLSRYANYL 90


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 634 LSLRHRGCRGFDVWAGSSEAVLAGDAAIYFRGSGASAVIYRQFSHSRD 491
           LS+  RG  GF   AG+  A L   AA+Y   + ++AV  R    S+D
Sbjct: 462 LSIIARGTSGF---AGADLANLINQAAVYASKNLSTAVSMRDLEWSKD 506


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -3

Query: 400 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 296
           W+VLF + L+  ++ P     V  LHGV + VN  + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,708
Number of Sequences: 5004
Number of extensions: 47134
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)