Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J15
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    30   2.4  
U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian ...    29   4.2  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    28   7.4  
AL033514-31|CAA22092.1|  444|Caenorhabditis elegans Hypothetical...    28   7.4  
AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine re...    28   7.4  
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +3

Query: 192 TSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSAT 371
           TS T  TTA+S   +T     +  T +   + +     +  S T + T  ST  S  ++T
Sbjct: 187 TSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTST 246

Query: 372 DRILSKSTS 398
           D   ++STS
Sbjct: 247 DSTTTESTS 255


>Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1098.4 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 485 QPIPRMRELPINYRGCPRAPKINRRVARQNRLRASGPDIKASAP 616
           + I  +RE P+N    P+  K    V  +N L    PD+  +AP
Sbjct: 235 ETIKFVREFPLNQADIPQEFKYRTSVIERNNLELEHPDVDYTAP 278


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 386 KKYFPLSFRTHHGRKLRQAHLQKLQPRL 469
           +++F L ++    +KLR+AHL+ +Q RL
Sbjct: 129 EEWFRLKYKPDDAKKLREAHLENVQKRL 156


>U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 1 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +3

Query: 102 NFSLCSQCACSPPAPASWNYPRTA*ALLTKTS-RTNCTTASSPVTTTVLYVRAWNTRAKA 278
           NF L   C  +P      N+   A A+ + TS  TN T+++S  T+  L    + T A  
Sbjct: 8   NFML--DCGMAPHMMPPINWAAAAIAVASSTSGATNATSSNSVATSQQLQHHPYGTAAGG 65

Query: 279 RAASFKM*LTI*SLTRDGTPWSTATSCGSATDRI 380
              + +      ++ +  TP+S AT+C  +++ I
Sbjct: 66  YKHAQQ------AIPKSVTPYSDATNCKKSSNHI 93


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 531 APEPRK*IAASPAKTASELPAQTSKPRHP 617
           APEP    A +PA  A+ +PAQ + P  P
Sbjct: 194 APEPAPEAAPAPAPEAAPVPAQDAAPAAP 222


>AL033514-31|CAA22092.1|  444|Caenorhabditis elegans Hypothetical
           protein Y75B8A.32 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
 Frame = +2

Query: 41  SLRLLXCSLETRSEKAPNKMKLLVVFAMCVLAASAGVVELSADSMSPSNQDLEDKLYNSI 220
           S+R +        ++  NK  +  + A  +      + ++   SM+P  +    K  N  
Sbjct: 210 SIRRMPAKKTPSVKRVTNKTAIKKIPAEKLPGKKPRMTKIERMSMTPEEKTKHIKKQNRT 269

Query: 221 LTGDYDSAVRKSLEYESQGQGSIVQNVVN--NLIIDKRRNTMEYCYKLWVGNGQDIVKKY 394
            T  YD   +K LE ++Q +   V+++VN        RRN +   Y++     +     Y
Sbjct: 270 NTATYDLKQKKKLE-DAQNKNLEVESLVNETKYKTQLRRNKIVEKYQVL---SERYNTHY 325

Query: 395 FPLSFRTHHGRKLRQAHLQKL 457
           F  SF    G KL+Q   +K+
Sbjct: 326 FYGSFEDFVG-KLQQEEYRKM 345


>AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein95 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 129 CSPPAPASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASF 293
           C PPAP S+ Y      ++    R   T  S  + T  L V  ++TR   R  +F
Sbjct: 107 CEPPAPLSFFYMYWINVVINDLFRRTSTWLSVVMATIRLIVLKFSTRRAFRKVNF 161


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 225 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILL 91
           V++LL ++S R     L  SA S+ T   A S HIA  ++  ILL
Sbjct: 118 VQLLLCNISDRDIFVKLRCSAASNITALPAGSGHIAPKSQMRILL 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,047
Number of Sequences: 27780
Number of extensions: 295093
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)