Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J14
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   206   2e-54
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   206   2e-54
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   4.5  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   6.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.9  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  206 bits (504), Expect = 2e-54
 Identities = 92/134 (68%), Positives = 118/134 (88%)
 Frame = +3

Query: 183 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 362
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 363 QLTVQNRXAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 542
           +LT+QNR A ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 543 MARYLSGSVKEILG 584
           +A+ LSG+VKEILG
Sbjct: 121 LAKELSGTVKEILG 134



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +1

Query: 571 KRFLGTAQSVGCTVEGXPPHDLIDDINSGALTIDE 675
           K  LGTA SVGCTV+G  PHD+  +I++G + I +
Sbjct: 130 KEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  206 bits (504), Expect = 2e-54
 Identities = 92/134 (68%), Positives = 118/134 (88%)
 Frame = +3

Query: 183 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 362
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 363 QLTVQNRXAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 542
           +LT+QNR A ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 543 MARYLSGSVKEILG 584
           +A+ LSG+VKEILG
Sbjct: 121 LAKELSGTVKEILG 134



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +1

Query: 571 KRFLGTAQSVGCTVEGXPPHDLIDDINSGALTIDE 675
           K  LGTA SVGCTV+G  PHD+  +I++G + I +
Sbjct: 130 KEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 580  RISFTEPERYRAXDLFLMIFAIPI-TSSREMLPL 482
            R+  ++PE     DLFL I A+ + TSS+ +LPL
Sbjct: 1477 RLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +3

Query: 351 KITVQLTVQNRXAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 530
           K + Q ++ N      V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 531 RNRSMARYLSGSVKEI 578
           RNR     L  +V  I
Sbjct: 83  RNRKARENLKVNVSSI 98


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 684 KHLFINGQSSAVDVINKIMWRXALHSTS 601
           K ++++ ++ A+D++NK M   A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 521  EDHEKQIXGPVPFWLSKRDSWAXHSQLDVL 610
            ED+E +I   +  +LS   +W   S LDVL
Sbjct: 1826 EDYELEIVSTLTMFLSNNLTWFRKSTLDVL 1855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,223
Number of Sequences: 5004
Number of extensions: 50205
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)