Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J14
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        208   6e-54
02_05_0416 + 28791512-28792012                                        204   7e-53
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    29   3.6  
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   4.8  
03_06_0776 - 36176390-36177589                                         29   6.3  
04_01_0314 - 4243928-4244361,4245178-4245415                           28   8.3  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  208 bits (507), Expect = 6e-54
 Identities = 99/135 (73%), Positives = 120/135 (88%), Gaps = 1/135 (0%)
 Frame = +3

Query: 183 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 359
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 360 VQLTVQNRXAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 539
           V+LTVQNR A+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120

Query: 540 SMARYLSGSVKEILG 584
           SMA+ ++G+VKEILG
Sbjct: 121 SMAKEMAGTVKEILG 135



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 571 KRFLGTAQSVGCTVEGXPPHDLIDDINSGALTI 669
           K  LGT  SVGCTV+G  P DL  +I+ G + I
Sbjct: 131 KEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  204 bits (498), Expect = 7e-53
 Identities = 97/135 (71%), Positives = 119/135 (88%), Gaps = 1/135 (0%)
 Frame = +3

Query: 183 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 359
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 360 VQLTVQNRXAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 539
           V+LTVQNR A+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120

Query: 540 SMARYLSGSVKEILG 584
           SMA+ ++G+VKEILG
Sbjct: 121 SMAKEMAGTVKEILG 135



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 571 KRFLGTAQSVGCTVEGXPPHDLIDDINSGALTI 669
           K  LGT  SVGCTV+G  P DL  +I+ G + I
Sbjct: 131 KEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
            3110157-3111444
          Length = 1821

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 471  NIKHN---GNISLEDVIGIAKIMRNRSMARYLSGSVKEILGHXTV 596
            N+ HN   G + LE+++  + I+       +LSG++KE+  H T+
Sbjct: 1213 NLSHNSLSGELPLEELVSSSSIVILDVSFNHLSGALKELSAHTTI 1257


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 339 WKGLKITVQLTVQNRXAQIAVVPSAAALIIRALKEPPRDRKKQ 467
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 465 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 554
           +K+I++ G++ LE    + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142


>04_01_0314 - 4243928-4244361,4245178-4245415
          Length = 223

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 393 IAVVPSAAALIIR--ALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGS 566
           + +V S    IIR   + E    +K    ++HN   S   V+G+   ++NRS   YL+  
Sbjct: 85  VLLVSSILLAIIRLICISEINNPQKSVSKLRHNTTTSRTIVVGLTTSLKNRS---YLNSP 141

Query: 567 VKEI-LGHXTVSW 602
             ++   H  + W
Sbjct: 142 KNQVNQSHEHIEW 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,280
Number of Sequences: 37544
Number of extensions: 368083
Number of successful extensions: 866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)