Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J13
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0439 + 24319464-24320102                                         30   2.1  
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    30   2.7  
01_07_0206 + 41990251-41992032,41992131-41992361                       30   2.7  
01_03_0237 + 14068713-14069315,14069654-14069914                       29   3.6  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.3  

>03_05_0439 + 24319464-24320102
          Length = 212

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +1

Query: 349 APGSWDPQGDSTNYGGRLDWANKNAEAAIDINRQIGGRSGMTATGSGVWDL 501
           AP +W P G     GGR  W    A AA  +    GG +G    G  +W L
Sbjct: 56  APSAWSPGG-----GGRRQWRAAGAAAAKWLPFVAGGAAGRYPYGRPLWGL 101


>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +1

Query: 274 GFLVKPVTTERSSM-MTAAN*PGRPTAPG--SWDPQGDSTNYGGRLDWANKNAEAAIDIN 444
           GFLV         + +++ N PG PT+PG  S++ QG +T  G +  W+++    + +  
Sbjct: 155 GFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQG-ATVVGYQQGWSSERVALSSNGQ 213

Query: 445 RQIGGRSGMTATGSG 489
           R+  G S +    +G
Sbjct: 214 RRHSGNSMVLPHNTG 228


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = +3

Query: 147 YWXXXXGYPVSGQFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREIF 311
           Y     G P+    S+R  R   W++Q+GG      +++G     D  L     +NR+  
Sbjct: 216 YQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQYV 273

Query: 312 NDDRGKLTGQA-YGTRVLGPAGXQYKLRWTSRL 407
           N D+  L+ QA   T  LG    Q+K  W  R+
Sbjct: 274 NMDKTWLSKQAEMSTLQLG----QWKPSWRHRI 302


>01_03_0237 + 14068713-14069315,14069654-14069914
          Length = 287

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 202 RVTSPGTNKWGEGRSSARWAKMMMGFLVKPVTTERSSMMTAAN*PGRPTAPGSWDPQGDS 381
           R   PGT + G     + WA+ +    ++    E  +  T +   GR T+PG W      
Sbjct: 166 RRLGPGTQRGGCRAEGSTWARGLASPGLQLKKRELEARRTESEKSGRDTSPGEWRSSSSR 225

Query: 382 TNYG 393
            + G
Sbjct: 226 LDLG 229


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 379  STNYGGRLDWANKNAEAAIDINRQI 453
            S+ +GG L W N + E+ +D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,985
Number of Sequences: 37544
Number of extensions: 364571
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)