Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J07
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   10.0 
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   10.0 

>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -3

Query: 490 IXLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHE 317
           + L H  +G     V   +I+G       RDG F HF V K +E +Q LG  ++ V H E
Sbjct: 407 VLLTHKPTGSFLVRVSE-RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDE 463

Query: 316 IF--VGFH 299
           +F  V +H
Sbjct: 464 LFDLVAYH 471


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -3

Query: 490 IXLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHE 317
           + L H  +G     V   +I+G       RDG F HF V K +E +Q LG  ++ V H E
Sbjct: 407 VLLTHKPTGSFLVRVSE-RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDE 463

Query: 316 IF--VGFH 299
           +F  V +H
Sbjct: 464 LFDLVAYH 471


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 404 LFKLFYYAKDFECFYKTACYARVYMNQXNVLI-RLLH-SYYPALR 532
           L  +  Y K FECF+K +   R+ + +  +L+ ++LH S+Y   R
Sbjct: 200 LLTITEYIKTFECFHKISSNDRLVLTRHIILMCKILHESHYAVSR 244


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 310 VGFHVCVAVLAGLDVEVLGDFVVLS-FIVDLVN 215
           V F V VA + GLD+E  GDFV+ S   +DL++
Sbjct: 8   VFFTVGVAAIYGLDLENAGDFVLPSGDFIDLIS 40


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 350 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 484
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 350 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 484
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,893
Number of Sequences: 27780
Number of extensions: 270951
Number of successful extensions: 651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)