Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J05
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 136 3e-33
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.29
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.88
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.5
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 27 4.7
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 8.2
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 136 bits (330), Expect = 3e-33
Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 1/236 (0%)
Frame = +3
Query: 177 AXLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPP 356
A LK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + ++ A P
Sbjct: 32 ATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAP 91
Query: 357 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSRGILQRLYG 533
E+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K R L R
Sbjct: 92 EEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCP 150
Query: 534 KHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTK 713
+ IG P+F +A Q+++ IL ++ ++YNKF S VS+ LYT
Sbjct: 151 ESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTT 210
Query: 714 KSIESASKLTAYDSLDSDVLQSYTEFSLASXXXXXXXXXXXXXXXRXRMTAMDNAS 881
K+I + L+AY+ D +V Q EF+ A+ R AM+NAS
Sbjct: 211 KAINESPNLSAYEVSD-EVHQPLMEFAFAN-AIFSAMAEAHCSEMSSRRNAMENAS 264
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.7 bits (66), Expect = 0.29
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 351 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 515
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 516 LQRLYGKHIISVA 554
L +Y ++VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 29.1 bits (62), Expect = 0.88
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 594 SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 773
S+ + IL + +FGS KII K +V S L + +I L +L +D+
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515
Query: 774 QSY 782
QS+
Sbjct: 2516 QSF 2518
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 470 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 336
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 470 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 336
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 821 QRVEQQRGQRELRVGLEHVAVQRVVRSQ 738
+R+EQ+R Q+E + L+ QR++RS+
Sbjct: 105 ERLEQERRQKEEAIALQKQQQQRLLRSK 132
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 526 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 654
C ++L L +S++ LS + +PL + RDT L+ +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 384 AMTSDRGLCGAVHTGVSKVIRNRLSE 461
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,402
Number of Sequences: 5004
Number of extensions: 68797
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -