Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J05
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 68 9e-12
07_03_0571 - 19602755-19603831 62 6e-10
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 31 0.93
07_03_1697 - 28795521-28797328,28797430-28797550 31 0.93
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 29 3.8
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 5.0
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 68.1 bits (159), Expect = 9e-12
Identities = 72/276 (26%), Positives = 127/276 (46%), Gaps = 44/276 (15%)
Frame = +3
Query: 186 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 365
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 366 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 536
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 537 HIISVANEIGRLPPTF-------------LDASQLATAILTS------------------ 623
+I +E+ + P + + ++L +A+L +
Sbjct: 176 NIEMTVSELQKNPINYTQDKEWHWWWRKVVQLAELVSAVLITLQQKFTDVIAVLADDILK 235
Query: 624 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLD----------SDVL 773
E+ + ++++NKF SV+S+ + + + + +E S+ LD S++L
Sbjct: 236 NVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEIL 295
Query: 774 QSYTEFSLASXXXXXXXXXXXXXXXRXRMTAMDNAS 881
Q+ TEF S RM+AMD++S
Sbjct: 296 QNLTEFQF-SCVMYNAALENACSELGARMSAMDSSS 330
>07_03_0571 - 19602755-19603831
Length = 358
Score = 62.1 bits (144), Expect = 6e-10
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Frame = +3
Query: 183 LKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPPE 359
L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y + E
Sbjct: 38 LRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTE 97
Query: 360 D----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDK 503
D K V +T +RGLCG+ + V K R+ E ++ V+ VG K
Sbjct: 98 DIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKK 157
Query: 504 SRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFKS 671
R + I E+ + PT D+ + + + K+ +Y+KF S
Sbjct: 158 GNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFVS 213
Query: 672 VV---SYAQSDLPLYTKKSI 722
+V Q+ LP+ K I
Sbjct: 214 LVRSDPIIQTLLPMSPKGEI 233
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 31.5 bits (68), Expect = 0.93
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -3
Query: 572 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 393
E ++ SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 392 GHSNKQLLGVIFGRCNLSP 336
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 31.5 bits (68), Expect = 0.93
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 731 GALNRLLSVEGQVGLGVRDHRLELVVNDLSGTK-LVSRGEDSSGQLTCVQESRWETSDLI 555
G ++S +G G+ H L +D++ T + SSGQ SR ET DL+
Sbjct: 46 GNSQEVISAPSSLGSGLPPHSKHLGSSDVASTSGSTPEAQISSGQQGADMTSRRETDDLV 105
Query: 554 SNTND 540
S N+
Sbjct: 106 SARNN 110
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 520 RDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPR-DTSLVPERSFTTSSSLWSRTPSPT 696
R E+T+ M SD+ T SWP+L + R T R F T ++ W + P+
Sbjct: 420 RRFAETTAASWPMPSDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVTYATSWKTSCGPS 479
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 463 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 338
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,021,116
Number of Sequences: 37544
Number of extensions: 522802
Number of successful extensions: 1442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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