Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J04
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     31   1.6  
07_01_1201 - 11419851-11419913,11420090-11420311                       29   6.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.3  
05_04_0364 + 20658219-20658416,20658475-20658543                       28   8.3  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 646 RELXRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 518
           R L RGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 584 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYR 682
           Q+WR+  PTG   + +FP G LP A     PA  R
Sbjct: 27  QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDR 61


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>05_04_0364 + 20658219-20658416,20658475-20658543
          Length = 88

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 589 VAKPDRTIKIPGVSPWXAPSCALLFRPCRLPDTVRLSPFGKRG 717
           V  PD T ++P +        A   RP +LP+T+ L P G+ G
Sbjct: 7   VVDPDSTCRLPVMKSRHPTRIAQSARPTQLPETLTLQP-GRSG 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,224,746
Number of Sequences: 37544
Number of extensions: 435064
Number of successful extensions: 1174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)