Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J03
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    31   0.21 
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.64 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.84 
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    28   1.5  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.9  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   5.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   5.9  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   7.8  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   7.8  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 225 NSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQFDY 359
           NS Y  +  S+  + NS+R S S SQ   +L  S   Q  Q  DY
Sbjct: 405 NSLYPVNNTSSEQHHNSYRGSVSNSQPSGNLSESTNLQPVQPVDY 449


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 171 AHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPS 293
           AH+ + ++ Q S+Q+ N+N   SN+Q  ++N   S + S S
Sbjct: 69  AHARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMSDKESDS 109



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 225 NSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQF 353
           N    +SQ +N N  NS+  +PS ++ +SD + SD +   Q F
Sbjct: 75  NDLQMSSQSANKNDDNSNNQNPSNNKEMSD-KESDSATTTQTF 116


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 177 SSLLSNAQYSTQAINRNS-HYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQF 353
           SS L ++  +    N NS +Y+N+   N+N ++   +S  Q    S L +S G+   Q +
Sbjct: 554 SSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNY 613

Query: 354 D 356
           +
Sbjct: 614 N 614


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 562 KHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAV 666
           ++D+  L IS    N P+ ND+P+  N + Y+  +
Sbjct: 382 RYDSVDLYISNDKRNLPEYNDVPVVINQDCYDKLI 416


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 219 NRNSHYSNSQFSN-SNYRNSHRASPSQSQHISDLQA 323
           NR S + NSQ+S  +N++N+   SP+ S  +  LQA
Sbjct: 234 NRVSSFQNSQYSTLNNFQNNSNQSPN-SNDLQPLQA 268


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 345  DNLVSHLKLVGHLYVVTEMEMHDDYF 268
            DN++   K   HLY+ T +E + D+F
Sbjct: 1055 DNIIHVYKCYQHLYLFTPLETNSDFF 1080


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 177 SSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGS 335
           SSLLS    S   +   S  S  Q ++++  +S   SPS S   S +  + GS
Sbjct: 337 SSLLSLLTQSFSTVRSTSSSSTDQLTSASPISSSVISPSVSSPTSSILTNSGS 389


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 369 LDLRNQIVDNL-VSHLKLVGHLYVVTEMEMHDDYFDNSNY 253
           LD+   +++ L +  L+L G   V T  ++ DD+  N NY
Sbjct: 793 LDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENY 832


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 586  ISVPNSNYPK--NNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNHASSINSDYSGQ 753
            +S P S+ P   +N  P P +S +   A A+TS  + +          SS  S  SG+
Sbjct: 1249 VSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGE 1306


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 589 SVPNSNYPKNNDLPIPENSELYEDAVAQTSN-QQFEEAGFNSHNHAS 726
           SVP+S   K +  P+    ++  D   +TSN      +  N H  +S
Sbjct: 116 SVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSS 162


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 177 SSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQFD 356
           SS  +    ST+ +  N+  SN+ FS++        + + S +         SQ Y ++ 
Sbjct: 33  SSFTNPTDSSTRLLYNNA--SNATFSSAALAAGVGGTRA-SGYTHRFSIRPSSQTYNRYP 89

Query: 357 YGGQAAAAEIYSKS 398
            GG +A +++YS S
Sbjct: 90  NGGNSAGSDMYSTS 103


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +2

Query: 413 LRIDTAMIRMPTTNTTRMHLLTMKRLLTLIPVFISPNISNQHTAIISN 556
           L +DT +     T+  +  +  +  L +L+P+ +S +I+NQ+ A++SN
Sbjct: 256 LSVDTFVDGTWDTSRVQCVIEALYALQSLVPIGLSSSIANQN-AVVSN 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,986
Number of Sequences: 5004
Number of extensions: 52761
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)