Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J03
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153...    30   2.7  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    29   4.7  

>01_06_1113 +
           34613668-34614075,34614781-34614970,34615264-34615372,
           34615822-34615912,34615948-34616076,34616306-34616804,
           34617154-34617251
          Length = 507

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +3

Query: 222 RNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQFDYGGQAAAAEIYSKSN 401
           R    +N + + SN+R+S   SP+  Q  +D  AS G +   +  Y        + ++  
Sbjct: 197 RGGGNNNWRDAKSNFRSSDSPSPASGQRRNDSPASGGHRKRPRIIYDANEVKQWLEARKK 256

Query: 402 GRVASXSIQQ*SECLRPIQ 458
               S +I + S  L P Q
Sbjct: 257 NYPTSVNINKASATLCPHQ 275


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 174 HSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQ-GYQQ 350
           +SS  S   ++T A    SHY N    +S+ +  + AS  Q       +   G Q GY+ 
Sbjct: 391 NSSTNSQVSFNT-AETATSHYGNVNLDSSSTQGGYTASGGQQTGYKGFEPFTGHQAGYKG 449

Query: 351 FDYG-GQAAAAEIYSKSNG 404
           F+   G   + +++  S G
Sbjct: 450 FEPSTGHQTSHKLFDPSAG 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,009
Number of Sequences: 37544
Number of extensions: 308305
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)