Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J03
(855 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC075798-1|AAH75798.1| 1222|Homo sapiens GPR126 protein protein. 32 3.1
AY181244-1|AAO27356.1| 541|Homo sapiens G protein-coupled recep... 32 3.1
AF216967-1|AAO13250.1| 1222|Homo sapiens putative vascular induc... 32 3.1
AB183549-1|BAD27574.1| 1222|Homo sapiens developmentally regulat... 32 3.1
AB183548-1|BAD27573.1| 1250|Homo sapiens developmentally regulat... 32 3.1
BC016305-1|AAH16305.1| 546|Homo sapiens Unknown (protein for IM... 31 4.0
AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1 ... 31 4.0
AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1 ... 31 4.0
AK022988-1|BAB14349.1| 452|Homo sapiens protein ( Homo sapiens ... 31 4.0
AB020691-1|BAA74907.1| 943|Homo sapiens KIAA0884 protein protein. 31 4.0
U13695-1|AAA63922.1| 932|Homo sapiens hPMS1 protein. 31 7.1
BC096332-1|AAH96332.1| 920|Homo sapiens PMS1 protein protein. 31 7.1
BC096331-1|AAH96331.1| 669|Homo sapiens PMS1 protein protein. 31 7.1
BC096330-1|AAH96330.1| 920|Homo sapiens PMS1 protein protein. 31 7.1
AY540751-1|ABB04020.1| 659|Homo sapiens rhabdomyosarcoma antige... 31 7.1
AY540750-1|ABB04019.1| 584|Homo sapiens rhabdomyosarcoma antige... 31 7.1
AY267352-1|AAO89079.1| 932|Homo sapiens PMS1 postmeiotic segreg... 31 7.1
AB102875-1|BAD89404.1| 893|Homo sapiens PMS1 nirs variant 7 pro... 31 7.1
AB102872-1|BAD89401.1| 555|Homo sapiens PMS1 nirs variant 4 pro... 31 7.1
AB102870-1|BAD89399.1| 770|Homo sapiens PMS1 nirs variant 2 pro... 31 7.1
AB102869-1|BAD89398.1| 667|Homo sapiens PMS1 nirs variant 1 pro... 31 7.1
BC020264-1|AAH20264.1| 406|Homo sapiens HERPUD family member 2 ... 30 9.3
BC005091-1|AAH05091.1| 406|Homo sapiens HERPUD2 protein protein. 30 9.3
>BC075798-1|AAH75798.1| 1222|Homo sapiens GPR126 protein protein.
Length = 1222
Score = 31.9 bits (69), Expect = 3.1
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 204 STQAINRNSHY--SNSQFSNSNY--RNSHRASPSQSQHISDLQASDGSQ 338
S+ +I NS Y S S+ S++ Y RNSH S S + +S L +DG Q
Sbjct: 1134 SSSSIGSNSTYLTSKSKSSSTTYFKRNSHTDSASMDKSLSKLAHADGDQ 1182
>AY181244-1|AAO27356.1| 541|Homo sapiens G protein-coupled receptor
126 protein.
Length = 541
Score = 31.9 bits (69), Expect = 3.1
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 204 STQAINRNSHY--SNSQFSNSNY--RNSHRASPSQSQHISDLQASDGSQ 338
S+ +I NS Y S S+ S++ Y RNSH S S + +S L +DG Q
Sbjct: 453 SSSSIGSNSTYLTSKSKSSSTTYFKRNSHTDSASMDKSLSKLAHADGDQ 501
>AF216967-1|AAO13250.1| 1222|Homo sapiens putative vascular inducible
G protein-coupled receptor protein.
Length = 1222
Score = 31.9 bits (69), Expect = 3.1
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 204 STQAINRNSHY--SNSQFSNSNY--RNSHRASPSQSQHISDLQASDGSQ 338
S+ +I NS Y S S+ S++ Y RNSH S S + +S L +DG Q
Sbjct: 1134 SSSSIGSNSTYLTSKSKSSSTTYFKRNSHTDSASMDKSLSKLAHADGDQ 1182
>AB183549-1|BAD27574.1| 1222|Homo sapiens developmentally regulated
G-protein-coupled receptor beta 2 protein.
Length = 1222
Score = 31.9 bits (69), Expect = 3.1
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 204 STQAINRNSHY--SNSQFSNSNY--RNSHRASPSQSQHISDLQASDGSQ 338
S+ +I NS Y S S+ S++ Y RNSH S S + +S L +DG Q
Sbjct: 1134 SSSSIGSNSTYLTSKSKSSSTTYFKRNSHTDSASMDKSLSKLAHADGDQ 1182
>AB183548-1|BAD27573.1| 1250|Homo sapiens developmentally regulated
G-protein-coupled receptor beta 1 protein.
Length = 1250
Score = 31.9 bits (69), Expect = 3.1
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 204 STQAINRNSHY--SNSQFSNSNY--RNSHRASPSQSQHISDLQASDGSQ 338
S+ +I NS Y S S+ S++ Y RNSH S S + +S L +DG Q
Sbjct: 1162 SSSSIGSNSTYLTSKSKSSSTTYFKRNSHTDSASMDKSLSKLAHADGDQ 1210
>BC016305-1|AAH16305.1| 546|Homo sapiens Unknown (protein for
IMAGE:4076117) protein.
Length = 546
Score = 31.5 bits (68), Expect = 4.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 547 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 720
+++W + + KPL + P ++DLP EN ++ ++ + ++ EE G N+ +H
Sbjct: 281 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 337
>AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1
isoform 2 protein.
Length = 2083
Score = 31.5 bits (68), Expect = 4.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 547 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 720
+++W + + KPL + P ++DLP EN ++ ++ + ++ EE G N+ +H
Sbjct: 436 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 492
>AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1
isoform 1 protein.
Length = 2036
Score = 31.5 bits (68), Expect = 4.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 547 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 720
+++W + + KPL + P ++DLP EN ++ ++ + ++ EE G N+ +H
Sbjct: 436 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 492
>AK022988-1|BAB14349.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ12926 fis, clone NT2RP2004732, weakly similar to
NEUROFILAMENT TRIPLET M PROTEIN. ).
Length = 452
Score = 31.5 bits (68), Expect = 4.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 547 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 720
+++W + + KPL + P ++DLP EN ++ ++ + ++ EE G N+ +H
Sbjct: 165 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 221
>AB020691-1|BAA74907.1| 943|Homo sapiens KIAA0884 protein protein.
Length = 943
Score = 31.5 bits (68), Expect = 4.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 547 HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 720
+++W + + KPL + P ++DLP EN ++ ++ + ++ EE G N+ +H
Sbjct: 275 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 331
>U13695-1|AAA63922.1| 932|Homo sapiens hPMS1 protein.
Length = 932
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>BC096332-1|AAH96332.1| 920|Homo sapiens PMS1 protein protein.
Length = 920
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>BC096331-1|AAH96331.1| 669|Homo sapiens PMS1 protein protein.
Length = 669
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>BC096330-1|AAH96330.1| 920|Homo sapiens PMS1 protein protein.
Length = 920
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>AY540751-1|ABB04020.1| 659|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.10E protein.
Length = 659
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512
>AY540750-1|ABB04019.1| 584|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.10B protein.
Length = 584
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 352 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 390
>AY267352-1|AAO89079.1| 932|Homo sapiens PMS1 postmeiotic
segregation increased 1 (S. cerevisiae) protein.
Length = 932
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>AB102875-1|BAD89404.1| 893|Homo sapiens PMS1 nirs variant 7
protein.
Length = 893
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512
>AB102872-1|BAD89401.1| 555|Homo sapiens PMS1 nirs variant 4
protein.
Length = 555
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 298 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 336
>AB102870-1|BAD89399.1| 770|Homo sapiens PMS1 nirs variant 2
protein.
Length = 770
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551
>AB102869-1|BAD89398.1| 667|Homo sapiens PMS1 nirs variant 1
protein.
Length = 667
Score = 30.7 bits (66), Expect = 7.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 574 KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 681
+P+ I VP + P NN+ PIPE L ED+ + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512
>BC020264-1|AAH20264.1| 406|Homo sapiens HERPUD family member 2
protein.
Length = 406
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 219 NRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQ 350
NR SH + + SNS+ +S +PS Q L S+G +Q
Sbjct: 100 NRESHEALTSSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQ 143
>BC005091-1|AAH05091.1| 406|Homo sapiens HERPUD2 protein protein.
Length = 406
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 219 NRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQ 350
NR SH + + SNS+ +S +PS Q L S+G +Q
Sbjct: 100 NRESHEALTSSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQ 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,349,551
Number of Sequences: 237096
Number of extensions: 1700924
Number of successful extensions: 3723
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3718
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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