Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J03
(855 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55364-5|AAQ23124.1| 368|Caenorhabditis elegans Prion-like-(q/n... 32 0.60
U55364-4|AAA97972.1| 382|Caenorhabditis elegans Prion-like-(q/n... 32 0.60
Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical pr... 31 1.4
AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein. 31 1.4
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 29 4.2
U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical pr... 29 5.6
U13876-13|AAA21172.3| 370|Caenorhabditis elegans Prion-like-(q/... 29 5.6
Z92833-5|CAK12560.1| 411|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z92833-4|CAK12559.1| 442|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical pr... 28 7.4
U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte grow... 28 7.4
U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork head/HNF-3... 28 7.4
>U55364-5|AAQ23124.1| 368|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform b protein.
Length = 368
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 189 SNAQYSTQAINRNSHYSNSQF---SNSNYRNSHRASPSQSQHISDLQASDGSQGYQQFDY 359
SN+Q+ Q N+N Y N+Q+ + N +N + S Q+Q+ Q S+ QQ+
Sbjct: 269 SNSQF--QQANQNGQYQNTQYQQQNGQNGQNQFQQSNGQNQNSQYQQTSNQQMNNQQYQT 326
Query: 360 G 362
G
Sbjct: 327 G 327
>U55364-4|AAA97972.1| 382|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform a protein.
Length = 382
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 189 SNAQYSTQAINRNSHYSNSQF---SNSNYRNSHRASPSQSQHISDLQASDGSQGYQQFDY 359
SN+Q+ Q N+N Y N+Q+ + N +N + S Q+Q+ Q S+ QQ+
Sbjct: 283 SNSQF--QQANQNGQYQNTQYQQQNGQNGQNQFQQSNGQNQNSQYQQTSNQQMNNQQYQT 340
Query: 360 G 362
G
Sbjct: 341 G 341
>Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical
protein T22H6.7 protein.
Length = 195
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 168 NAHSSLLSNAQYSTQAI--NRNSHYSNSQFSNS 260
N++S+ SN QYS Q NRN+ Y NS + N+
Sbjct: 144 NSNSNFNSNQQYSYQQYYNNRNNQYGNSGYGNA 176
>AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein.
Length = 195
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 168 NAHSSLLSNAQYSTQAI--NRNSHYSNSQFSNS 260
N++S+ SN QYS Q NRN+ Y NS + N+
Sbjct: 144 NSNSNFNSNQQYSYQQYYNNRNNQYGNSGYGNA 176
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 553 QWEKHDTKPLIISVPNSNYPKNNDLPIPENSELY 654
++E TK ++ P +PK ++PIP+ ++L+
Sbjct: 60 EYEVKMTKEVLNRKPGKPFPKKTEIPIPDRAKLF 93
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 553 QWEKHDTKPLIISVPNSNYPKNNDLPIPENSELY 654
++E TK ++ P +PK ++PIP+ ++L+
Sbjct: 60 EYEVKMTKEVLNRKPGKPFPKKTEIPIPDRAKLF 93
>U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical
protein F14B8.6 protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 583 IISVPNSNYP--KNNDLPIPENSELYEDAVAQTSNQQFEEA---GFNSHNHASSINSDY 744
++ +SN P N + PI S + + T N++ A GFN + S++N+DY
Sbjct: 117 LLMTQSSNQPDRNNQNTPIQVTSNTNQWTLTATINRKCNGADQYGFNCNEQCSTVNNDY 175
>U13876-13|AAA21172.3| 370|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 46
protein.
Length = 370
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 219 NRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGYQQ 350
N N++Y+N+ ++N+N N Q Q Q Q QQ
Sbjct: 79 NNNNNYNNNNYNNNNNYNQQPQGAQQPQQQVQQQVQQPQQPVQQ 122
>Z92833-5|CAK12560.1| 411|Caenorhabditis elegans Hypothetical
protein F38A6.1c protein.
Length = 411
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 198 QYSTQAINRNSHYSNSQFSNSNYRNSHRASPS---QSQHISDLQASDGSQGYQQFDYG-G 365
QY T A ++ + SQ++ +N S+ SP+ Q IS L + G+ G
Sbjct: 21 QYQTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTTGATTAAASVA 80
Query: 366 QAAAAEIYSKSNGRVAS 416
++A+ + +SNGR +S
Sbjct: 81 TSSASAVIGRSNGRSSS 97
>Z92833-4|CAK12559.1| 442|Caenorhabditis elegans Hypothetical
protein F38A6.1b protein.
Length = 442
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 198 QYSTQAINRNSHYSNSQFSNSNYRNSHRASPS---QSQHISDLQASDGSQGYQQFDYG-G 365
QY T A ++ + SQ++ +N S+ SP+ Q IS L + G+ G
Sbjct: 52 QYQTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTTGATTAAASVA 111
Query: 366 QAAAAEIYSKSNGRVAS 416
++A+ + +SNGR +S
Sbjct: 112 TSSASAVIGRSNGRSSS 128
>Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical
protein F38A6.1a protein.
Length = 506
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 198 QYSTQAINRNSHYSNSQFSNSNYRNSHRASPS---QSQHISDLQASDGSQGYQQFDYG-G 365
QY T A ++ + SQ++ +N S+ SP+ Q IS L + G+ G
Sbjct: 116 QYQTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTTGATTAAASVA 175
Query: 366 QAAAAEIYSKSNGRVAS 416
++A+ + +SNGR +S
Sbjct: 176 TSSASAVIGRSNGRSSS 192
>U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte growth
factor-regulatedtk substrate (hrs) family protein 1
protein.
Length = 729
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +3
Query: 201 YSTQAINRNSHYSNSQFSNSNYRN-SHRASPSQSQHISDLQASDGSQGYQQFD 356
Y N N Y Q S + +H Q+QH AS+G GY D
Sbjct: 655 YQNGTTNENGQYQQQQSSEVKQEHQNHGYQQQQAQHPPASVASNGHNGYGNVD 707
>U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork
head/HNF-3-like protein protein.
Length = 506
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 198 QYSTQAINRNSHYSNSQFSNSNYRNSHRASPS---QSQHISDLQASDGSQGYQQFDYG-G 365
QY T A ++ + SQ++ +N S+ SP+ Q IS L + G+ G
Sbjct: 116 QYQTAANGLLNYNNYSQYATANQLGSNYISPANFMQGGGISPLGFTTGTTGATTAAASVA 175
Query: 366 QAAAAEIYSKSNGRVAS 416
++A+ + +SNGR +S
Sbjct: 176 TSSASAVIGRSNGRSSS 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,148
Number of Sequences: 27780
Number of extensions: 289919
Number of successful extensions: 1008
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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