Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_J01
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    31   0.21 
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.64 
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    29   0.64 
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.64 
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    28   1.5  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        27   2.6  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 253 LIIKADXSNDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
           L ++AD S  +   T +++ I   G +DVL N AG+
Sbjct: 48  LALQADVSKADQIETAIEKVIQTLGPIDVLINNAGL 83


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 LIIKADXSNDEXAXTXVQQTIDAFGKLDVLXNXAG 357
           L+ + D +N       V++ I  FG++DVL N AG
Sbjct: 17  LVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAG 51


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
 Frame = +1

Query: 94  TXKVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGK--KPLIIKA 267
           T KV LVT           +  A+ GA V   GRN  K   V +      +  K   ++ 
Sbjct: 41  TGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRL 100

Query: 268 DXSNDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
           D  + E      +  I    KL +L N AG+
Sbjct: 101 DLLDFESVYQAAESFIAKEEKLHILVNNAGI 131


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 LIIKADXSNDEXAXTXVQQTIDAFGKLDVLXNXAG 357
           L+ + D +N       V++ I  FG++DVL N AG
Sbjct: 17  LVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAG 51


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 256 IIKADXSNDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
           IIK D S+ E A    Q+   A GK+DVL   +G+
Sbjct: 58  IIKLDISSLESANEAAQEVAKAVGKVDVLWVNSGI 92


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 535 WHWYHG-STDTGYVYXVSXRLDEVRS 461
           W WY     D+GYVY  S   +E RS
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,887
Number of Sequences: 5004
Number of extensions: 18246
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)