Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_J01
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452... 47 2e-05
11_04_0393 + 17185845-17186042,17189342-17189534,17190513-171905... 46 5e-05
04_04_1139 + 31173271-31173462,31173928-31174087,31174318-311744... 43 3e-04
04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482... 41 0.001
02_03_0341 - 17948124-17948183,17948417-17948499,17948668-179487... 41 0.001
04_03_0828 - 20118303-20119086,20119197-20119240 36 0.054
03_06_0636 - 35215034-35215336,35215417-35215584,35215599-352157... 35 0.095
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 34 0.17
03_02_0695 + 10472174-10472286,10472390-10473239 33 0.29
04_04_0105 - 22812730-22813066,22813406-22813565,22814613-22814820 31 1.5
04_01_0406 - 5345149-5345935,5346302-5346339 30 2.7
04_01_0407 - 5350916-5351699,5351930-5351970 29 3.6
>04_03_0745 +
19244089-19244521,19244638-19244723,19245090-19245221,
19245335-19245499,19245602-19245892
Length = 368
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGKKPLI-IKADXS 276
KVVLVT +A+ GA +A V R L VA +G ++ + D +
Sbjct: 67 KVVLVTGASSGIGEQVAYRYARRGARLALVARREASLGEVAARARALGSPDVLAVPGDVA 126
Query: 277 NDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+ VQ T++ FG+LD L N AG+
Sbjct: 127 RPDDCRRFVQATVEHFGRLDHLVNNAGL 154
>11_04_0393 +
17185845-17186042,17189342-17189534,17190513-17190598,
17191123-17191254,17191930-17192094,17192397-17192687
Length = 354
Score = 45.6 bits (103), Expect = 5e-05
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGKKP-LIIKADXS 276
KVVLVT +AK GA VA R L VA+ +G L++ AD +
Sbjct: 53 KVVLVTGASSGIGEHLVYEYAKKGACVALTARTEIALRAVAKTARDLGAPDVLVVPADIT 112
Query: 277 NDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+ A V++T+ FGKL+ L AG+
Sbjct: 113 KVDDAKRAVEETVAHFGKLNHLVANAGI 140
>04_04_1139 +
31173271-31173462,31173928-31174087,31174318-31174487,
31174566-31174788,31175053-31175207
Length = 299
Score = 43.2 bits (97), Expect = 3e-04
Identities = 27/85 (31%), Positives = 34/85 (40%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGKKPLIIKADXSN 279
K LVT A+ GA VA +GR LD G + + + D
Sbjct: 15 KAALVTGGGSGIGFEIAAQLARHGAHVAIMGRRREVLDKAVAALRSHGLRAVGFEGDVRK 74
Query: 280 DEXAXTXVQQTIDAFGKLDVLXNXA 354
E A V T+ FGKLD+L N A
Sbjct: 75 QEDAARVVAATVQHFGKLDILVNGA 99
>04_03_0746 +
19247529-19247723,19247808-19248000,19248145-19248230,
19248861-19249028,19249445-19249738
Length = 311
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGKK-PLIIKADXS 276
KVVL+T +A+ GA +A V R L V G L++ D S
Sbjct: 52 KVVLITGASSGIGEHLAYEYARRGAYLALVARREESLREVGDAALAAGSPGVLVVAGDVS 111
Query: 277 NDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+ + V TI FG+LD L N A +
Sbjct: 112 SPDDCRKFVDDTIRYFGRLDHLVNNASI 139
>02_03_0341 -
17948124-17948183,17948417-17948499,17948668-17948761,
17948848-17948982,17949099-17949131,17949207-17949301,
17949394-17949439,17949517-17949597,17949874-17949927,
17950361-17950506,17952192-17952330
Length = 321
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +1
Query: 103 VVLVTXXXXXXXXXXXVHFAKXGAXV-AXVGRNVTKLDXVARXCAXVGKKPLIIKADXSN 279
VV+VT + F K G V R+ T + V + G + + + D SN
Sbjct: 71 VVVVTGASRGIGKAIALAFGKAGCKVLVNYARSSTDAEEVCKEIEGFGGQAITFRGDVSN 130
Query: 280 DEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+ + ++ +D +G +DVL N AG+
Sbjct: 131 EADVDSMIKAAVDTWGTIDVLVNNAGI 157
>04_03_0828 - 20118303-20119086,20119197-20119240
Length = 275
Score = 35.5 bits (78), Expect = 0.054
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGKKPL-IIKADXS 276
KV L+T F K GA V + + AR CA +G ++ D +
Sbjct: 19 KVALITGGASGIGECTARLFVKHGAQVVVAD---IQDEAGARLCAELGSATASYVRCDVT 75
Query: 277 NDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+++ V + +GKLDV+ N AG+
Sbjct: 76 SEDDVAAAVDHAVARYGKLDVMFNNAGI 103
>03_06_0636 -
35215034-35215336,35215417-35215584,35215599-35215799,
35215877-35215962,35216037-35216229,35216304-35216489
Length = 378
Score = 34.7 bits (76), Expect = 0.095
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGK-KPLIIKADXS 276
KVVL+T +A+ A + V R +L V +G + L+I AD
Sbjct: 49 KVVLITGASSAIGEQIAYEYARRNANLVLVARREHRLFAVRENARALGAGQVLVIAADVV 108
Query: 277 NDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
++ V TI FG+L+ L N +
Sbjct: 109 KEDDCRRLVGDTISFFGQLNHLVNTVSL 136
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 33.9 bits (74), Expect = 0.17
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKL----DXVARXCAXVGKKPLIIKA 267
+VVLVT + A+ G V R +L D + ++
Sbjct: 23 RVVLVTGASSGLGREFCLDLARAGCLVVAAARRADRLRSLCDEINASAPRASAAAAAVEL 82
Query: 268 DXSNDEXAX-TXVQQTIDAFGKLDVLXNXAGM 360
D ++ A VQ DAFG++DVL N AG+
Sbjct: 83 DVASGGPALEAAVQSAWDAFGRIDVLINNAGL 114
>03_02_0695 + 10472174-10472286,10472390-10473239
Length = 320
Score = 33.1 bits (72), Expect = 0.29
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = +1
Query: 100 KVVLVTXXXXXXXXXXXVHFAKXGAXVAXVGRNVTKLDXVARXCAXVGKKPLIIKADXSN 279
KV +VT F K GA V + + +A A +G ++ D S
Sbjct: 42 KVAIVTGGARGIGEAIVRLFVKHGAKVVIADIDDAAGEALA---AALGPHVGFVRCDVSV 98
Query: 280 DEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+E V++ + +G+LDVL N AG+
Sbjct: 99 EEDVERAVERAVARYGRLDVLCNNAGV 125
>04_04_0105 - 22812730-22813066,22813406-22813565,22814613-22814820
Length = 234
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 253 LIIKADXSNDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
L+++ D +DE A V + G++DVL N AG+
Sbjct: 11 LLLELDVRSDESARAAVADAVRELGRVDVLVNNAGV 46
>04_01_0406 - 5345149-5345935,5346302-5346339
Length = 274
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 259 IKADXSNDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+ D +N+ V + FGKLDV+ N AG+
Sbjct: 68 VHCDVTNEGDVAAAVDHAVATFGKLDVMFNNAGV 101
>04_01_0407 - 5350916-5351699,5351930-5351970
Length = 274
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 259 IKADXSNDEXAXTXVQQTIDAFGKLDVLXNXAGM 360
+ D +N+ V + FGKLDV+ N AG+
Sbjct: 69 VHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGV 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,259
Number of Sequences: 37544
Number of extensions: 187603
Number of successful extensions: 591
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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