Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_I24
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 190 2e-48
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 44 2e-04
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 42 6e-04
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 41 0.001
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 33 0.40
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 30 2.8
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 8.5
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 190 bits (462), Expect = 2e-48
Identities = 103/206 (50%), Positives = 130/206 (63%), Gaps = 8/206 (3%)
Frame = +3
Query: 120 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 290
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 291 EQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 455
E R PR+++VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 456 ELWNMPFAFCTREKQPWCEFAESDEDGPTTXFLRELAIKYAMVIVSSILERDEKHSDILW 635
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEP-VDGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 636 NTAVVXSDTGNVIGKHRXNHIPRVGD 713
NTAVV + GN+IG HR NHIPRVGD
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGD 231
Score = 42.3 bits (95), Expect = 5e-04
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 713 FNESTTTWKV-PGHPVFXTXXXXIAVXICFGRXXVLNWMMXG 835
FNEST + GHPVF T I V IC+GR LNW+ G
Sbjct: 232 FNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFG 273
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Frame = +3
Query: 366 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESDEDG--- 536
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 537 -PTTXFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVXSDTGNVIGKHRXNHI 698
P+ + E+A + +V + E+ + L+NT V G + GKHR H+
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/100 (26%), Positives = 53/100 (53%)
Frame = +3
Query: 402 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESDEDGPTTXFLRELAIKYAM 581
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 582 VIVSSILERDEKHSDILWNTAVVXSDTGNVIGKHRXNHIP 701
VI S E+ ++ +N+ + G +G +R +HIP
Sbjct: 91 VIPVSFF---EEANNAHYNSVAIIDADGTDLGLYRKSHIP 127
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = +3
Query: 444 ICFQELWNMPFAFCTREKQPWCEFAESDEDG--PTTXFLRELAIKYAMVIVSSILERDEK 617
+ FQE+WN P++ E P E + G P+ L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 618 HSDILWNTAVVXSDTGNVIGKHRXNHIPRV---GDLT 719
S L+NT V G + KHR H+ + GD+T
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDIT 105
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 516 AESDEDGPTTXFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVXSDTGNVIGKHR 686
A D GP L LA KY + +V ++ER L+NT + G +GKHR
Sbjct: 104 AAIDVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHR 157
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 535 PSSSDSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 425
PS++ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 508 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 377
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,258,724
Number of Sequences: 37544
Number of extensions: 436948
Number of successful extensions: 1190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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