Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I23
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0834 + 32302065-32302143,32303136-32303275,32303371-323034...    29   3.9  
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142...    29   5.2  

>01_06_0834 +
           32302065-32302143,32303136-32303275,32303371-32303436,
           32303867-32303950,32304532-32304699,32305061-32305126,
           32306027-32306452
          Length = 342

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 30  FLKILGIRDVMLRSVLFLTTGFLFAACLTSVMSDKPTTK----PICEQAFGNSG 179
           F+KI    D +LR++L   +  +F     + +S  P+      P+CE AFG  G
Sbjct: 43  FVKIEDGADALLRNILAFRSHQIFHGIKITKVSPGPSLNFCPYPLCESAFGQEG 96


>04_04_1500 +
           34010819-34011016,34013267-34013308,34014195-34014204,
           34014526-34014586,34014621-34014678,34015266-34015412,
           34015643-34016205,34018942-34019728
          Length = 621

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 22/72 (30%), Positives = 25/72 (34%)
 Frame = +3

Query: 90  GFLFAACLTSVMSDKPTTKPICEQAFGNSGPSFAYIKLYSYNQKTKKCEEFIYGGCQGND 269
           G L A    S  + KP          G  GP          N KTK CE F+ G C   D
Sbjct: 552 GELIATISPSTPAKKPAGSAAGAAPAGRGGPGGRS------NYKTKLCENFVKGTCTFGD 605

Query: 270 NRFITLAECEQK 305
                  E EQ+
Sbjct: 606 RCHFAHGENEQR 617


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,176,887
Number of Sequences: 37544
Number of extensions: 219557
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)