Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_I18
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 178 5e-45
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 89 3e-18
AF014940-5|AAB63937.1| 203|Caenorhabditis elegans Suppressor/en... 56 3e-08
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 37 0.022
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 7.8
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 7.8
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 178 bits (433), Expect = 5e-45
Identities = 81/148 (54%), Positives = 113/148 (76%), Gaps = 2/148 (1%)
Frame = +3
Query: 303 IKDSKGHILSQKDTVT--KGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIE 476
+ D++GH L +++ KGKF+F + YD+FE+C + P+ G +VSL +K G+E
Sbjct: 57 VTDTRGHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVE 116
Query: 477 AKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREXEMRDTNESTNNRVLFFSI 656
AK Y+ I +A KLKP+EVEL+RLED++++I +DF MR+RE EMR+TNESTN+RVL+ SI
Sbjct: 117 AKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSI 176
Query: 657 FSMACLLGLATWQVLYLRRFFKAKKLIE 740
FSM CLLGLA WQVL+LR +FK+KKLI+
Sbjct: 177 FSMLCLLGLAIWQVLFLRNYFKSKKLID 204
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +2
Query: 140 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTE 274
LV+ LS I ++ + + P KCLKEE+H NV+V GEY+ ++
Sbjct: 4 LVIFLSAIVLA-HSLRFYVPPKEKKCLKEEIHKNVVVTGEYEFSQ 47
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 89.4 bits (212), Expect = 3e-18
Identities = 46/145 (31%), Positives = 78/145 (53%)
Frame = +3
Query: 303 IKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAK 482
+KD + ++ K +G+F+F + +C S + G +V LDI+ G A+
Sbjct: 67 VKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQ 126
Query: 483 TYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREXEMRDTNESTNNRVLFFSIFS 662
Y I + KL +++ +++L D + I ++ R RE R T+ESTN+RV ++SI
Sbjct: 127 DYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQ 186
Query: 663 MACLLGLATWQVLYLRRFFKAKKLI 737
+ L WQ+ +LR FF+AKKL+
Sbjct: 187 VVVLAITGAWQMRHLRGFFEAKKLV 211
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 131 VQYLVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDV 268
++ L+ LLSL + D++ + +A KC EE+ +V G Y V
Sbjct: 1 MRLLIALLSLATYA-DSLYFHIAETEKKCFIEEIPDETMVTGNYKV 45
>AF014940-5|AAB63937.1| 203|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein9 protein.
Length = 203
Score = 56.0 bits (129), Expect = 3e-08
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Frame = +3
Query: 348 TKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIG---EAAKLK 518
+ GKF+F ++ CF +K+ + P V ++I + G +AA
Sbjct: 74 SSGKFTFAAHMDGVYTYCFGNKMSTMT---PKAVMFTVEITEPHQQAPGAAANQDAADNA 130
Query: 519 PMEVELKRLEDLSEAIVQDFTLMRKREXEMRDTNESTNNRVLFFSIFSMACLLGLATWQV 698
+E ++ L ++ + M RE R+ NE+TN+RV+ ++ F L+G+ Q+
Sbjct: 131 KLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQI 190
Query: 699 LYLRRFFKAKKLI 737
YL+RFF+ + ++
Sbjct: 191 FYLKRFFEVRTMV 203
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 303 IKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAK 482
+KD + ++ K ++G+F+F + +C S + G +V LDI+ G A+
Sbjct: 67 VKDPEDKVILSKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDIQAGDHAQ 126
Query: 483 TYEGIGEAAKL 515
Y + E KL
Sbjct: 127 DYAQVEEERKL 137
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 131 VQYLVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDV 268
++ L+ LLSL + D++ + +A KC EE+ +V G Y V
Sbjct: 1 MRLLIALLSLATYA-DSLYFHIAETEKKCFIEEIPDETMVTGNYKV 45
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 372 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 494
T+ D +CFI + + + Q +D+KIG + +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 372 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 494
T+ D +CFI + + + Q +D+KIG + +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,977,471
Number of Sequences: 27780
Number of extensions: 345047
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -