Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I17
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.19 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 908 TPPXPXPPPXPP 943
           TPP P PPP PP
Sbjct: 337 TPPKPAPPPPPP 348


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +2

Query: 788 PXXPPPPSXXXPPXPXPPPXXXXXPLXXLPLPPP 889
           P   PP S    P P P P     P+    + PP
Sbjct: 433 PILTPPSSNPVSPVPSPDPLDLAIPVRETLILPP 466


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 807  PPXXSPXPPXPPP 845
            P   SP PP PPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 785  PPXXPPPPS 811
            PP  PPPPS
Sbjct: 1355 PPPPPPPPS 1363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,337
Number of Sequences: 438
Number of extensions: 5060
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)