Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I16
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   4.6  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.6  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   6.0  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 221 FPIKSIEVASKKNILRSVCLFMSKILNELNDSPTFLSKQ 105
           +P +S   ++KKN++     + +   ++ ND PT    Q
Sbjct: 73  YPRRSASTSAKKNVIPITRSYSTTFFSKTNDQPTVTGNQ 111


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 3/23 (13%)
 Frame = +1

Query: 76  QIAY-SNLERN-C-FDKNVGLSF 135
           Q+ Y SNL++N C FDKNVGL F
Sbjct: 412 QVYYASNLDKNYCMFDKNVGLGF 434


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 116 LSKQLRSRFEYAICTLSASFLTFSKILRNSL 24
           L+KQL   F Y + T+  S+  F+ +LR  L
Sbjct: 196 LNKQLDHFFSYKVTTVHKSYQRFATLLRRHL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,553
Number of Sequences: 5004
Number of extensions: 50437
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)