Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I16
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 370 ETHYDQKSIWTCIIFRKYHPFILKVSCSIKKEKKTA 263
           +TH  + S W  ++F  + P IL++S    KE++ A
Sbjct: 324 DTH--EMSEWVKVVFLYWLPCILRMSRPSDKEEREA 357


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 320 FPKDNASPNRFLIVMR--FFHINTTVPDLIRLH 412
           F K+   P+ F +  +  +FHI TT  + IR+H
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 320 FPKDNASPNRFLIVMR--FFHINTTVPDLIRLH 412
           F K+   P+ F +  +  +FHI TT  + IR+H
Sbjct: 89  FIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 121


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 320 FPKDNASPNRFLIVMR--FFHINTTVPDLIRLH 412
           F K+   P+ F +  +  +FHI TT  + IR+H
Sbjct: 28  FIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 60


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 31  FLKIFENVKKLALSVQIAYSNLERNCF 111
           + KIF   +++ L  + A S+LE +C+
Sbjct: 222 YYKIFCAARRIVLEERRAQSHLEAHCY 248


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 85  YSNLERN---CFDKNVGLSFNSFNILDINKQTLLRMFFFEATSID 210
           ++ + RN   C+D N  L+ N+F ++  N  T   M F    SID
Sbjct: 313 FTQINRNGIACWDTNTELNPNTFILVAENNTT---MVFCNDLSID 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,892
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)