Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I15
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    32   0.12 
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   2.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.5  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   6.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   8.1  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   8.1  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +3

Query: 474  KEGDYELDPKLKKDAVEVFDADFEKVN---FDNGAAAAGLINKWVENKTNERI 623
            K+G   L+PK+  + V  + +++EK++   FD+     GL++ +  N+ N  +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREV 1329


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/71 (23%), Positives = 26/71 (36%)
 Frame = -2

Query: 842 SRXAHXGRGSHHTGXMXLVHHRNXNCRFGVNIERSLHGAYRVELVLPCTLEVESXDQNQT 663
           SR     +   HTG +    H   NCRF +        + +  L  PC+   E     + 
Sbjct: 107 SRAGFSYKAREHTGKLDFCAH--CNCRFTITPYSKYSNSEKGWLCYPCSRGAEDRSVPEL 164

Query: 662 RKRXEAVFTQE 630
           R R     T++
Sbjct: 165 RTRKRKALTRK 175


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 450  NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVN 554
            + ++  Y+K+G +EL   +  D   V D DF+ V+
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 650 EAVFTQEIFNAFICFIFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKF 501
           + +   EI  A I FI +     A  CG  ++ NF  + I Y+D VL KF
Sbjct: 11  QIILCTEIDEACIQFIKSQIEGIARACGPRMQANFEGVLIPYVD-VLGKF 59


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 522  EVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLXSFTRLV 671
            E++ A    +N  +   A   +NK+  NKT+E  + L ++ ++     LV
Sbjct: 1766 EIYRASLPGLNASSEKEARDYLNKFAGNKTDELYQMLCNDPNVFDIESLV 1815


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 195 SMDSKALSSAITKFSAKFCNELDKKKNVVS 284
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,556
Number of Sequences: 5004
Number of extensions: 57089
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)