Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I11
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.25 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.32 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 689 PPXPPPPXPPP 721
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 819 PXPPPXPPPPXXXPP 863
           P P P PPPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 674 PPXXXPPXPPPPXPPP 721
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect(2) = 0.25
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 698 PPPPXPPPXP 727
           PP P PPP P
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect(2) = 0.25
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 746 PXXXPPPPPP 775
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
 Frame = +3

Query: 660 PXXXXPXPXXXPXXPPXXXXPXPPPXP-XXPPXXXPPXXPXXXXP 791
           P    P P   P   P       PP P   PP   PP  P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 705 PXXXXPXPPPXPXXPPXXXPPXXPXXXXPPPPPXXXXXPXPPPXPPP 845
           P    P P P P   P       P      PPP     P  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP--GGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 692 PXPPPPXPPPXPXPXPXXPXXXPPPPP 772
           P    P P P P   P  P    PP P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNP 42



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 674 PPXXXPPXPPPPXPPPXPXPXPXXPXXXPPPPPP 775
           P     P  P    PP P   P  P   PP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGP--PPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +3

Query: 792 PPPPXXXXXPXPPPXPPPPXXXPPXPXXP 878
           PP P        PP P  P   P  P  P
Sbjct: 418 PPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 698  PPPPXPPP 721
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 825  PPPXPPPP 848
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 2.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 758  PPPPPP 775
            PPPPPP
Sbjct: 1357 PPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 2.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 689  PPXPPPP 709
            PP PPPP
Sbjct: 1355 PPPPPPP 1361


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 762 GGXXXGXXGXGXGXGGGXGGGGXG 691
           GG   G  G     G   GGGG G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,218
Number of Sequences: 438
Number of extensions: 7951
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)