Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I09
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    28   1.5  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    28   2.0  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   4.6  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   4.6  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   8.1  

>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 412 DGPLKSLSIYLTSPCEEYPHFGMIESYNLTIAADSTLRSS 531
           DGP   + +  T+P  + PHF M  + + +I+A S  RS+
Sbjct: 41  DGPATFVRLKCTNPESKVPHFLMRMAKDSSISATSMFRSA 80


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +1

Query: 631 DFPRLPSQRTAR*HITSLHLNV*YPTHFGRYGH 729
           DFP+  S RTAR HITSL   + YP   G   H
Sbjct: 125 DFPKFQSSRTAR-HITSL---LTYPMSIGAILH 153


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 337 RDMLRIASPYVNRNAPQQVLDDDTYDGPL 423
           +D+  IAS Y ++  P  +  DD + GPL
Sbjct: 263 KDLQTIASLYDDQQLPSWITKDDLFRGPL 291


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 25  TSMWNXXRF*TFLYSTLIASSRAYKMFR 108
           T+MW+  +   F+YST   SS+ +K+++
Sbjct: 320 TNMWDFVKTLEFIYSTRNYSSQMFKLYK 347


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 357 RDSEHVSQYRQTPLDGIRQNRTIVIHYLNFKYITIKFVVR 238
           R  EH+    QT L+ +  N+   ++  NF++I   F  R
Sbjct: 190 RICEHIENGSQTVLEILLMNQNSFLNNFNFEHIKADFAFR 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,358
Number of Sequences: 5004
Number of extensions: 67559
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)