Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_I09
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1000 - 23220878-23221821,23222164-23223001 57 2e-08
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 56 5e-08
03_02_0187 - 6248226-6249226,6249296-6250148 53 3e-07
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 40 0.003
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 31 0.91
03_05_0799 + 27809301-27811550 31 1.2
06_03_0662 - 23229957-23230204,23231021-23231160,23231257-232313... 30 2.1
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 30 2.1
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841... 29 3.7
01_06_0714 + 31413195-31413221,31414238-31414786 29 3.7
04_03_0980 + 21406822-21409496,21410322-21410376 29 6.4
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 57.2 bits (132), Expect = 2e-08
Identities = 27/73 (36%), Positives = 34/73 (46%)
Frame = +2
Query: 638 PXYPHRGLLVDTSRHYISMSNILLILDXXXXXXXNVFHWHIX*RPXLPISXRKVXXFXSP 817
P YPHRGL++DT R Y +++IL +D NVFHWHI P+
Sbjct: 185 PLYPHRGLMLDTGRTYFPVADILRTIDAMAANKMNVFHWHITDSQSFPLELPSEPALAEK 244
Query: 818 GSLSRXXIYTXKD 856
GS YT D
Sbjct: 245 GSYGDGMRYTVDD 257
Score = 35.9 bits (79), Expect = 0.042
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Frame = +1
Query: 202 IWPRPQMQSIEIPYYKFD-SDVLEIKVMDHDCPILSNAVQRSLAVLRDMLR-IASPYVNR 375
+WP+P S P+ S + + +LS A + + +L + R + +P VN
Sbjct: 35 VWPKPTSMSWAEPHMAVRVSSSFHVVAPSGNAHLLSAARRYAALLLAERYRPLVTPAVNV 94
Query: 376 NAPQQVLDDDTYDGPLKSLSIYLTSPCEEYPHFGMIESYNLTI---AADSTLRSSSIWGI 546
A L L++ ++ H G+ ESY L I A +T+ +++ WG
Sbjct: 95 TAGGAGAGAAGRGAELGYLTLAVSDLHAPLQH-GVDESYALEILPAGAAATVTAATAWGA 153
Query: 547 LRGLESWTHL 576
+RGLE+++ L
Sbjct: 154 MRGLETFSQL 163
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 55.6 bits (128), Expect = 5e-08
Identities = 28/76 (36%), Positives = 37/76 (48%)
Frame = +2
Query: 629 TTFPXYPHRGLLVDTSRHYISMSNILLILDXXXXXXXNVFHWHIX*RPXLPISXRKVXXF 808
T P +P+RGLL+DTSRHY+ + I ++D NV HWHI PI
Sbjct: 167 TDMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMTYSKLNVLHWHIVDEQSFPIEIPSYPKL 226
Query: 809 XSPGSLSRXXIYTXKD 856
+ G+ S YT D
Sbjct: 227 WN-GAYSYSERYTMDD 241
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Frame = +1
Query: 421 LKSLSIYLTSPCEEYPHFGMIESYNLTIAADST-----LRSSSIWGILRGLESWTHL--F 579
L +++ + P +E +FG+ ESYNL++ A + + + +++G L LE+++ L F
Sbjct: 92 LAGVNVVVHLPGDEL-NFGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNF 150
Query: 580 HLSDNRDQLHINKGEVHDFPRLP 648
+ +L + D PR P
Sbjct: 151 DFTSRLIELQSAPWSITDMPRFP 173
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 53.2 bits (122), Expect = 3e-07
Identities = 27/79 (34%), Positives = 39/79 (49%)
Frame = +2
Query: 620 VKFTTFPXYPHRGLLVDTSRHYISMSNILLILDXXXXXXXNVFHWHIX*RPXLPISXRKV 799
++ + P + HRG+L+DT+R++ + +IL L NVFHWHI PI V
Sbjct: 184 IEISDRPHFTHRGILLDTARNFYPVRDILHTLRAMAFNKLNVFHWHITDAQSFPIVLPTV 243
Query: 800 XXFXSPGSLSRXXIYTXKD 856
+ GS S YT D
Sbjct: 244 PNLANSGSYSPTMRYTEND 262
Score = 32.7 bits (71), Expect = 0.39
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Frame = +1
Query: 175 PEYPASKGAIWPRPQMQSIEIPYYKFDSDVLEIK-VMDHDCPILSNAVQRSLAVLRDMLR 351
P A K +WP+P S Y S ++ V+ H P L AV ++R
Sbjct: 39 PPLLAQKVQVWPKPTSISWPSAVYAPLSPSFSVRAVLSH--PSLRQAVAFYTRLIR---- 92
Query: 352 IASPYVNRNAPQQVLDDDTYDG-PLKSLSIYLTSPCEEYPHFGMI-ESYNLTIAADS--- 516
R+AP + T P+++L++ ++ P + P + ESY L++ DS
Sbjct: 93 -----AERHAPLVPPANYTLSRVPVRTLTLSVSDP--DVPLGPAVDESYTLSVLPDSGSA 145
Query: 517 TLRSSSIWGILRGLESWTHL 576
+ +++ WG +RGLE+++ L
Sbjct: 146 DISAATPWGAIRGLETFSQL 165
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/66 (34%), Positives = 29/66 (43%)
Frame = +2
Query: 659 LLVDTSRHYISMSNILLILDXXXXXXXNVFHWHIX*RPXLPISXRKVXXFXSPGSLSRXX 838
L DTSRHY+ ++ I ++D NV HWHI PI + GS S
Sbjct: 170 LHADTSRHYLPVTVIKKVIDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKLWN-GSYSFSE 228
Query: 839 IYTXKD 856
YT D
Sbjct: 229 RYTTSD 234
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 31.5 bits (68), Expect = 0.91
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 638 PXYPHRGLLVDTSRHYISMSNILLILD 718
P + RGLL+DTSRH++ + I ++D
Sbjct: 183 PRFAFRGLLLDTSRHFLPVDVIKQVID 209
>03_05_0799 + 27809301-27811550
Length = 749
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 274 KVMDHDCPILSNAVQRSLAVLRDMLRIASPYVNR 375
KV++H P++ A SLAVLR +L + S VNR
Sbjct: 90 KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNR 123
>06_03_0662 -
23229957-23230204,23231021-23231160,23231257-23231394,
23231501-23231676,23232071-23232152,23233531-23233666,
23237028-23237145
Length = 345
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 469 HFGMIESYNL--TIAADSTLRSSSIWGILRGLESWTHLFHLSDNRDQLHINKG 621
HFG+++SY++ T+ + S S I+ G + W H+F +++ NKG
Sbjct: 217 HFGLVKSYDMPCTVESASLEPKSGSKFIVGGEDMWVHVFDFFTG-EEITCNKG 268
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 235 IPYYKFDSDVLEIKVMDHDCPILSNAVQRSLAVLRD-MLRIASPYVNRNAPQQVLDDDTY 411
IPYY FD V +++ + SN V+R ++ LRD + R P + P +V+ +
Sbjct: 143 IPYYSFDQFVRKVEKVG-----ASNRVRRCVSELRDRVARGGDPTLLHEPPVEVIPEGEP 197
Query: 412 DG 417
DG
Sbjct: 198 DG 199
>02_05_1317 -
35683659-35683756,35683904-35683966,35684068-35684182,
35684385-35684486,35684687-35684756,35684878-35684952,
35685188-35685279,35685386-35685493,35685560-35685640,
35685728-35685771,35685858-35685984
Length = 324
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 400 HLRPVVGHCGLHTDSRFGA 344
HL P V HCG H++ FGA
Sbjct: 117 HLLPGVYHCGYHSEDSFGA 135
>01_06_0714 + 31413195-31413221,31414238-31414786
Length = 191
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 273 NFKYITIKFVVRNFYRLHLRSWPNCTF 193
NF ++ + +R RL +R WPNC F
Sbjct: 76 NFAWLLLHNRLRTADRLQIRQWPNCYF 102
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 240 RNFYRLHLRSWPNCTFRCWIFGSRFHDMQTGH 145
+N LHLRS P F ++ S F D++T H
Sbjct: 734 QNLQHLHLRSCPRLQFVLPVWASSFPDLKTLH 765
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,318,446
Number of Sequences: 37544
Number of extensions: 437069
Number of successful extensions: 990
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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