Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I09
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    50   2e-06
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    29   4.3  
U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian ...    29   5.7  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +2

Query: 638 PXYPHRGLLVDTSRHYISMSNILLILDXXXXXXXNVFHWHIX*RPXLPISXRKVXXFXSP 817
           P +P RG+++D+SRH++S++ I   L+       NV HWH+      P +  K       
Sbjct: 168 PRFPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGV 227

Query: 818 GSLSRXXIYTXKD 856
           G+ S   +Y+ +D
Sbjct: 228 GAYSPRHVYSRED 240



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 466 PHFGMIESYNLTIA-ADSTLRSSSIWGILRGLESWTHLFHLSDNRDQLHINKGEVHDFPR 642
           P  G  E Y L ++  ++ + + ++WG LR +ES +HL        +  I   E+ D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 643 LP 648
            P
Sbjct: 170 FP 171


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +2

Query: 638 PXYPHRGLLVDTSRHYISMSNILLILDXXXXXXXNVFHWHIX*RPXLPISXRKVXXFXSP 817
           P +P RG+++D+SRH++S++ I   L+       NV HWH+      P +  K       
Sbjct: 168 PRFPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGV 227

Query: 818 GSLSRXXIYTXKD 856
           G+ S   +Y+ +D
Sbjct: 228 GAYSPRHVYSRED 240



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 466 PHFGMIESYNLTIA-ADSTLRSSSIWGILRGLESWTHLFHLSDNRDQLHINKGEVHDFPR 642
           P  G  E Y L ++  ++ + + ++WG LR +ES +HL        +  I   E+ D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 643 LP 648
            P
Sbjct: 170 FP 171


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 430 LSIYLTSPCEEYPHFGMIESYNLTIAADSTLRSSSIWGILRGLESWTHLF 579
           LSI L   CEE+PH   +    + +A+  TL+ + I+ +L  +  +   F
Sbjct: 334 LSISLAVLCEEFPH--ELGDVAILVASGMTLKQALIYNLLSAITCYVGFF 381


>U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian
           oncogene) relatedkinase protein 1, isoform a protein.
          Length = 566

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 394 LDDDTYDGPLKSLSIYLTSPCEEYPHFGMIESYNLTIAADSTLRSSSIWGILR 552
           L   +YD    S S    S CE +PH G   S + ++ A   ++S+S + ++R
Sbjct: 401 LVSSSYDDQFTSTSDIYQSACEVFPHTGSSSSLSRSMGA---VKSASAYNLVR 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,363,992
Number of Sequences: 27780
Number of extensions: 379206
Number of successful extensions: 998
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)