Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I08
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   5.8  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +2

Query: 248 LLIDWVKLKDKGSKFCKGISSVKLHEYNDDYYPHLLKPLTEGLVEIIDSFQNIIEGIKIL 427
           ++I   ++K K   +  GISSV  +     YY  ++  +    VE  +    I  G+K+L
Sbjct: 319 IIIPQNQVKRKHDIYIAGISSVH-NVCPKGYYLAIISTI----VETANPLSEIAPGLKLL 373

Query: 428 KNQLESLSXLQSTDQPV 478
              +ES S +Q   +PV
Sbjct: 374 GPVVESFSRVQEIYEPV 390


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 380 QLSPQSMASIGADNNHHYTRAVSLMRSL 297
           +LS QS  ++ AD N HY RA+  ++ L
Sbjct: 263 KLSEQS-GNVTADTNEHYDRAMQYLKQL 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,847
Number of Sequences: 5004
Number of extensions: 32847
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)