Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_I08
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    36   0.053
06_01_0200 - 1543260-1544561                                           33   0.38 
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535...    32   0.50 
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    29   4.6  

>04_04_1212 - 31786063-31786195,31786275-31786398,31786486-31786597,
            31786691-31786822,31786929-31787111,31787351-31787479,
            31787618-31787788,31788142-31788244,31788628-31788737,
            31789158-31789265,31789337-31789512,31790082-31790352,
            31790524-31790738,31791042-31792574,31792665-31792728,
            31793171-31793251
          Length = 1214

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +2

Query: 314  KLHEYNDDYYPHLLKPLTEGLVEIIDSFQNIIEGIKILKNQLESLSXLQSTDQPVILXLV 493
            K H   +   P +  P ++  + +  + +N++EG    K  L+    LQ TD PV+  ++
Sbjct: 965  KFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVV-GII 1023

Query: 494  SR 499
            SR
Sbjct: 1024 SR 1025


>06_01_0200 - 1543260-1544561
          Length = 433

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 257 DWVKLKDKGSKFCKGISSVKLHEYNDDYYPHLLKPLTEGLVEIIDSFQNIIEGIKILK 430
           DW+   D GS  C G+  +   +Y  ++Y  +LK +      IIDSF+++   + +L+
Sbjct: 50  DWLSRNDIGSNNCIGVDCISA-DY--EHYVKVLKLIYLPAESIIDSFESVRSAVGVLR 104


>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
            5350375-5350589,5351123-5351393,5351986-5352161,
            5352287-5352394,5352821-5352930,5354291-5354393,
            5354658-5354828,5354952-5355080,5355322-5355504,
            5355612-5355701,5355823-5355934,5356100-5356227,
            5357769-5357825,5357872-5357923,5358318-5358393,
            5358860-5358950,5359046-5359224,5359563-5359681,
            5359783-5359880
          Length = 1955

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 344  PHLLKPLTEGLVEIIDSFQNIIEGIKILKNQLESLSXLQSTDQPVI 481
            P +  P T+  + +  + +N++EG    K  L+    LQ TD P++
Sbjct: 1549 PDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIV 1594


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 347  HLLKPLTEGLVEIIDSFQNIIEGIKILKNQLE 442
            HLL+     L  ++ S Q  IEG KI+K +LE
Sbjct: 1497 HLLQGKNRELCGVVGSLQVAIEGAKIVKEELE 1528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,344
Number of Sequences: 37544
Number of extensions: 172871
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)