Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_I01
(1058 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.34
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.34
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.34
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.45
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.4
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 4.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.6
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 5.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.6
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 5.6
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 5.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.34
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
PGG P G G PPP G PPP GG PP
Sbjct: 732 PGGLPPITG-GPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXG--GGXFPP 893
PGG P G PPP G P PPP G GG PP
Sbjct: 748 PGGLPPISGGPPPPPPPPGG---CPPPPPPPPPGGFKGGPPPP 787
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +1
Query: 844 PPPXXXPFLXXXKXXXXGGTXPPPXGGXXXXLGXLKXXPXXWGGXPXPXPXXGGXPPG 1017
PPP P G PPP GG G P GG P P P PPG
Sbjct: 726 PPPPPPP--GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP---PPPG 778
Score = 28.3 bits (60), Expect = 9.8
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Frame = +1
Query: 895 GGTXPP-PXGGXXXXLGXLKXXPXXW------GGXPXPXPXXGGXPP 1014
GG PP P GG G P GG P P P GG PP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.34
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
PGG P G G PPP G PPP GG PP
Sbjct: 732 PGGLPPITG-GPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXG--GGXFPP 893
PGG P G PPP G P PPP G GG PP
Sbjct: 748 PGGLPPISGGPPPPPPPPGG---CPPPPPPPPPGGFKGGPPPP 787
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +1
Query: 844 PPPXXXPFLXXXKXXXXGGTXPPPXGGXXXXLGXLKXXPXXWGGXPXPXPXXGGXPPG 1017
PPP P G PPP GG G P GG P P P PPG
Sbjct: 726 PPPPPPP--GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP---PPPG 778
Score = 28.3 bits (60), Expect = 9.8
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Frame = +1
Query: 895 GGTXPP-PXGGXXXXLGXLKXXPXXW------GGXPXPXPXXGGXPP 1014
GG PP P GG G P GG P P P GG PP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.34
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
PGG P G G PPP G PPP GG PP
Sbjct: 315 PGGLPPITG-GPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXG--GGXFPP 893
PGG P G PPP G P PPP G GG PP
Sbjct: 331 PGGLPPISGGPPPPPPPPGG---CPPPPPPPPPGGFKGGPPPP 370
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +1
Query: 844 PPPXXXPFLXXXKXXXXGGTXPPPXGGXXXXLGXLKXXPXXWGGXPXPXPXXGGXPPG 1017
PPP P G PPP GG G P GG P P P PPG
Sbjct: 309 PPPPPPP--GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP---PPPG 361
Score = 28.3 bits (60), Expect = 9.8
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Frame = +1
Query: 895 GGTXPP-PXGGXXXXLGXLKXXPXXW------GGXPXPXPXXGGXPP 1014
GG PP P GG G P GG P P P GG PP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 32.7 bits (71), Expect = 0.45
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = +1
Query: 829 FFLXXPPPXXXPFLXXXKXXXXGGTXPPPXGGXXXXLGXLKXXPXXWGGXPXPXPXXGGX 1008
FF+ PPP F+ GG PPP G + P GG P P P G
Sbjct: 63 FFI--PPPVPNGFIPPPPGP--GGIPPPPP----MFAGGIPPPPPMMGGIPPPPPMFGAP 114
Query: 1009 PP 1014
PP
Sbjct: 115 PP 116
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 492 PKKXPXXXGXPPPRXPXPFGXPGGXGXXXPKXXXPKTPXXPXQKN*PK 349
P P PPPR P P P P+ P+TP P +N P+
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPP--MTPPSPQRRPPRTPPSPEPRNPPR 185
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
P G P G G PPP G PPP G PP
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
Score = 29.5 bits (63), Expect = 4.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 1009 GXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
G P PPP G P PPP GG PP
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = +1
Query: 844 PPPXXXPFLXXXKXXXXGGTXPPPXGGXXXXLGXLKXXPXXWGGXPXPXPXXGGXPPG 1017
PPP P G PPP G P G P P P G P G
Sbjct: 255 PPPP--PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 310
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
P G P G G PPP G PPP G PP
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
Score = 29.5 bits (63), Expect = 4.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 1009 GXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
G P PPP G P PPP GG PP
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = +1
Query: 844 PPPXXXPFLXXXKXXXXGGTXPPPXGGXXXXLGXLKXXPXXWGGXPXPXPXXGGXPPG 1017
PPP P G PPP G P G P P P G P G
Sbjct: 276 PPPP--PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 331
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -2
Query: 1015 PGGXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
P G P G G PPP G PPP G PP
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
Score = 29.5 bits (63), Expect = 4.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 1009 GXPXXXGXGXXPPPXXXGFXLXRPXXXXPPPXGGGXFPP 893
G P PPP G P PPP GG PP
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = +1
Query: 844 PPPXXXPFLXXXKXXXXGGTXPPPXGGXXXXLGXLKXXPXXWGGXPXPXPXXGGXPPG 1017
PPP P G PPP G P G P P P G P G
Sbjct: 261 PPPP--PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 316
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -3
Query: 492 PKKXPXXXGXPPPRXPXPFGXPGGXGXXXPK-XXXPKTPXXP 370
P K P PPP P P G PG G P+ P P P
Sbjct: 122 PPKEPCEPITPPPCKPCPEGPPGPAGPPGPQGNKGPLGPPGP 163
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -3
Query: 492 PKKXPXXXGXPPPRXPXPFGXPGGXGXXXPK-XXXPKTPXXPXQKN*PKPE 343
P K P PPP P P G PG G P P P P P E
Sbjct: 124 PPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGE 174
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 480 PXXXGXPPPRXPXPFGXPGGXGXXXPKXXXPKTP 379
P G PPP P FG PG G P + P
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 492 PKKXPXXXGXPPPRXPXPFGXPGGXGXXXP--KXXXPKTPXXPXQ 364
P + P PPP P P G PG G P P +P P Q
Sbjct: 132 PPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQ 176
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 480 PXXXGXPPPRXPXPFGXPGGXGXXXPKXXXPKTP 379
P G PPP P FG PG G P + P
Sbjct: 321 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 492 PKKXPXXXGXPPPRXPXPFGXPGGXGXXXP--KXXXPKTPXXPXQ 364
P + P PPP P P G PG G P P +P P Q
Sbjct: 132 PPQQPCEPITPPPWKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQ 176
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 492 PKKXPXXXGXPPPRXPXPFGXPGGXGXXXP--KXXXPKTPXXPXQ 364
P + P PPP P P G PG G P P +P P Q
Sbjct: 132 PPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQ 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,126,056
Number of Sequences: 27780
Number of extensions: 241985
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2824804260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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