Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_H23
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 263 3e-71
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 219 4e-58
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 143 3e-35
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 122 5e-29
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 101 1e-22
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 97 2e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 97 3e-21
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 93 4e-20
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 91 1e-19
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 91 2e-19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 88 2e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 86 5e-18
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 84 2e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 81 2e-16
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 79 6e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 77 3e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 77 3e-15
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 69 7e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 5e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 65 1e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 58 2e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 56 7e-09
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 4e-07
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.002
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.66
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 2.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.7
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.7
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.5
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.7
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 6.1
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 8.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 8.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 8.1
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 263 bits (644), Expect = 3e-71
Identities = 122/176 (69%), Positives = 151/176 (85%)
Frame = +2
Query: 179 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 358
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 359 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 538
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
Query: 539 TNVREDIRQLESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGFXD 706
T VR+D+ L++GV VVVG P V+DMI RRAL + + +FVLD D+MLS GF D
Sbjct: 125 TLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKD 180
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 219 bits (535), Expect = 4e-58
Identities = 107/177 (60%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Frame = +2
Query: 179 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 355
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 356 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 535
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIG
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
Query: 536 GTNVREDIRQLESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGFXD 706
GT+V DI++L+ G VV G P V DMI RR L + + +LD D++L+ GF +
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKE 182
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 143 bits (347), Expect = 3e-35
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 4/194 (2%)
Frame = +2
Query: 131 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 298
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 299 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 478
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 479 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVXVVVGXPXXVYDMITRRALHANTIXL 658
+V LG H+N K GGT +R+DI +L V +VVG P V D+ + +
Sbjct: 130 QVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTT 189
Query: 659 FVLDXXDDMLSXGF 700
FV+D D +LS F
Sbjct: 190 FVMDEADKLLSPEF 203
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 122 bits (295), Expect = 5e-29
Identities = 64/160 (40%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Frame = +2
Query: 218 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 391
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 392 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQL 568
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +++ + +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGA 227
Query: 569 ESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDML 688
+ +V+G P V D++ RR L A I +FVLD D+ML
Sbjct: 228 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 267
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 101 bits (243), Expect = 1e-22
Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Frame = +2
Query: 227 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 406
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 407 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI---RQLES 574
I+ E L+L TRELA QI+ +L + + GG N+++D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 575 GVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDML 688
+VV P + ++ + L N++ FVLD D +L
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLL 210
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 97.5 bits (232), Expect = 2e-21
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = +2
Query: 224 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 403
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 404 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 574
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 575 GVXVVVGXPXXVYD-MITRRALHANTIXLFVLDXXDDMLSXGFXD 706
+V+ P D M + I + V+D D ML GF D
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFAD 424
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 97.1 bits (231), Expect = 3e-21
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Frame = +2
Query: 227 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 406
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 407 IDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 580
+ +++ +ALIL+P RELA Q KVV + + A +GG ++ E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 581 XVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGF 700
+VV P + L ++I V D D + GF
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGF 230
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 93.5 bits (222), Expect = 4e-20
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Frame = +2
Query: 203 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 382
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 383 FSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 538
F I ++ I + E A++LAPTRELAQQIQ + L +C + +GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 539 TNVREDIRQLESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGFXD 706
E Q+ G +VV P + D + RR + V+D D ML GF D
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFED 418
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 91.5 bits (217), Expect = 1e-19
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 1/207 (0%)
Frame = +2
Query: 83 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 262
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 263 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALI 442
GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ + A++
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 443 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVXVVVGXPXXVYDMI 622
LAPTRELA QI + A+G + + +GG ++ L V+V P + D +
Sbjct: 120 LAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHL 179
Query: 623 -TRRALHANTIXLFVLDXXDDMLSXGF 700
+ + ++D D +L F
Sbjct: 180 ENTKGFSLKNLKYLIMDEADRLLDMDF 206
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 91.1 bits (216), Expect = 2e-19
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Frame = +2
Query: 221 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 400
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 401 Q------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 562
+ QID + R AL+L PTRELAQQ+ V+ L + TN + ++
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 563 Q--LESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGFXD 706
+ L +V+ P + L + + V+D D MLS G+ +
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNE 183
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 87.8 bits (208), Expect = 2e-18
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Frame = +2
Query: 218 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 388
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 389 ISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 565
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 566 LESGVXVVVGXPXXVYDMI-TRRALHANTIXLFVLDXXDDMLSXGFXD 706
L GV ++V P + D + + + V+D D +L GF D
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFED 255
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 86.2 bits (204), Expect = 5e-18
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Frame = +2
Query: 221 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 400
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 401 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 580
++ ALIL PTRELA QI + ALG +LN K +GG ++ L
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 581 XVVVGXPXXVYDMITRRALHA----NTIXLFVLDXXDDMLSXGFXDPXP*C 721
VVV P + D+I I V+D D +LS F D C
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDC 177
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 84.2 bits (199), Expect = 2e-17
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Frame = +2
Query: 218 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 397
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 398 LQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 562
+ I+ L+LAPTRELA QIQ+ G + GG IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 563 QLESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGF 700
L GV + + P + DM+ + + VLD D ML GF
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGF 286
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 81.4 bits (192), Expect = 2e-16
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Frame = +2
Query: 203 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 382
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 383 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 547
F + + + I ++ + A+I+ PTRELA QI + LN + GG +
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531
Query: 548 REDIRQLESGVXVVVGXPXXVYDMITR---RALHANTIXLFVLDXXDDMLSXGF 700
++ I L+ G +VV P + D+++ R + + VLD D M GF
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGF 585
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 79.4 bits (187), Expect = 6e-16
Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Frame = +2
Query: 218 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 397
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 398 LQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 571
L+ + + QAL++APTRELA QI + + N + + GG V++ R L
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 572 SGVXVVVGXPXXVYDMITRRALHAN--TIXLFVLDXXDDML 688
VVV P ++ +I L N I VLD D +L
Sbjct: 241 KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL 281
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 77.4 bits (182), Expect = 3e-15
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Frame = +2
Query: 227 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 406
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 407 ID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 577
++ + + L+++PTRELA Q + + +L N K GG E R ++
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN- 285
Query: 578 VXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGF 700
V++G P + D+I ++ + + VLD D ML GF
Sbjct: 286 ASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGF 326
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 77.0 bits (181), Expect = 3e-15
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Frame = +2
Query: 218 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 397
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 398 L--------------QQIDTSIRECQA----LILAPTRELAQQIQKVVIALGDHLNAKCH 523
L Q R +A LILAPTREL QI + +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 524 ACIGGTNVREDIRQLESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGF 700
A GG ++R IRQ++ G ++ P + D+I R + I VLD D ML GF
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGF 346
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 69.3 bits (162), Expect = 7e-13
Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Frame = +2
Query: 212 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 391
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 392 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 559
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 560 RQLESGVXVVVGXPXXVYDMITRRA-LHANTIXLFVLDXXDDMLSXGF 700
+L S + ++V P + I + + + + +LD D +L GF
Sbjct: 156 ERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 66.5 bits (155), Expect = 5e-12
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Frame = +2
Query: 224 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 403
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 404 QI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDHLNAKCHACIGGTN 544
++ DT ALI+APTRELA QI V L G L A + GT
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 545 VREDIRQLESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGF 700
+ E VV+G P + +M++ + + + + +LD D ++ GF
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGF 171
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 64.9 bits (151), Expect = 1e-11
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Frame = +2
Query: 290 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 442
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 443 LAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVXVVVGXPXXV 610
+APTREL QQI V L + H C+ IGG + + ++ GV +++G P +
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 611 YDMI-TRRALHANTIXLFVLDXXDDMLSXGFXD 706
D + AL + + VLD D ++ GF +
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLMDMGFEE 313
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 57.6 bits (133), Expect = 2e-09
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Frame = +2
Query: 278 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 439
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 440 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVREDIRQLESGVXVVVGXPXXVYD 616
IL+PTRELA QI + L + IGG + +RE+ +++ P + D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 617 MITR-RALHANTIXLFVLDXXDDMLSXGFXD 706
+ R L + + F+LD D ++ GF +
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAE 207
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.0 bits (129), Expect = 7e-09
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Frame = +2
Query: 248 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 412
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 413 TSI-RECQALILAPTRELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGVXV 586
+ +A+I+APTREL +QI + L + K ++E +L +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDM 169
Query: 587 VVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGFXD 706
+G P + I + L + FV+D D + GF +
Sbjct: 170 CIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLFEPGFIE 208
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 50.0 bits (114), Expect = 4e-07
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Frame = +2
Query: 245 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 418
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 419 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL-----ESGVX 583
+ + +++ PTREL Q+ K + A G ++R + QL E +
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRID 262
Query: 584 VVVGXPXXVYDMITR-RALHANTIXLFVLDXXDDMLSXGFXD 706
V+V P + D I + + V+D D +L F D
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQD 304
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 242 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 418
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 419 IRECQALILAPTRELAQQIQKVVI 490
+ A + PT+ LAQ +K +I
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLI 377
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 194 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 340
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 191 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 283
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 362 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 478
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.5 bits (58), Expect = 2.7
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Frame = +2
Query: 305 QRAIMPCIQGRD--VIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPT 454
Q + P G D ++ A +G GKT + IL ++ +RE + + +AP
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPL 583
Query: 455 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVXVVVGXPXXVYDMITRRA 634
+ L Q++ N + G + + +Q S ++V P +D+ITR+A
Sbjct: 584 KALVQEMVNNFSKRLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKA 639
Query: 635 ---LHANTIXLFVLD 670
+ N + L ++D
Sbjct: 640 NDLSYVNLVRLVIID 654
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 394 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 495
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 168 DLREWTLGHLTPT 206
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 508 QVITKSYHHLLNLLGQLSCGSQDQ 437
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 473 IQKVVIALGDHLNAKCHACIGGTNVRED 556
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 568 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 467
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 188 QGPFPEVHRNYLDPSMAHFWNPLANL 111
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,198
Number of Sequences: 5004
Number of extensions: 60463
Number of successful extensions: 200
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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