Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H23
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       93   3e-21
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 93.1 bits (221), Expect = 3e-21
 Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
 Frame = +2

Query: 212 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 391
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 392 SIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 544
            I+     + +D  +     E Q +I++PTREL  QI + ++    +   K     GGT+
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTS 312

Query: 545 VREDIRQLESGVXVVVGXPXXVYDMITRRALHANTIXLFVLDXXDDMLSXGF 700
           V     +L +G  ++V  P  + D + +  +  +++   VLD  D ML  GF
Sbjct: 313 VMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGF 364


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 357 SQELEKLLLSLYRFYNKSIQAFVNV 431
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 548 GHWCHQCKHGI*HSS 504
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +1

Query: 241 PQRRIVERHIRLWF*KTFC----NPATRNNAL 324
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 526 LHWWHQCP 549
           LH WH CP
Sbjct: 470 LHHWHHCP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,874
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)