Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H22
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    87   4e-18
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    30   0.50 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    29   1.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   3.6  

>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 48/125 (38%), Positives = 72/125 (57%)
 Frame = +3

Query: 360 TGFTPNQIERLYSRFTSLDKNDCGTLSREDFLRIPELAINPLSERIVQSFFAESHDDRVN 539
           + F+  +IER+  RF  +D N  G++ R +FL IP +A NPL+ R+  S   E     V+
Sbjct: 16  SSFSNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLASRLF-SVVDEDGGGDVD 74

Query: 540 FLQFMRVLAXFXPIKXNRENXLXCREEKLRFAFSMYDLDXDGXISXDDLLAILHMMVGAH 719
           F +F+  L+ F  +  N+E       EKL+FAF +YD+D DG IS  +L  +L MMVG +
Sbjct: 75  FQEFINSLSVFS-VHGNKE-------EKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTN 126

Query: 720 XXXDR 734
              D+
Sbjct: 127 LREDQ 131


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 369 TPNQIERLYSRFTSLDKNDCGTLSREDFLRIPELAINPLSERIVQSFFAESHDDRVNFLQ 548
           T +QI+ L   F  LDK+  G + RED   +        SE  +   F ES +  +N   
Sbjct: 43  TSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMF-ESINPPINLAA 101

Query: 549 FMRVL 563
           F+  +
Sbjct: 102 FLTAM 106


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 309 KSSLLLREEXIAQIQEETGFTPNQIERLYSRFTSLDKND-CGTLSREDFLRIPELAINPL 485
           +S L  +EE + +       T N+I R Y   T L KN+   + S E+ +R  +     L
Sbjct: 469 ESQLREKEEDLIRANRLKQDTLNEISRTYQELTFLQKNNPTYSQSMENLIREAQETYQQL 528

Query: 486 SERIV 500
           S+R++
Sbjct: 529 SKRLL 533


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = +3

Query: 330  EEXIAQIQEETGFTPNQIERLYSRFTSLDKNDCGTLSRE----DFLRIPELAINPLSERI 497
            +E  + I EE     ++IE        L +      +RE    D LR+  L +  L E +
Sbjct: 964  KEKKSNIGEEVRIIASKIESTDDNLRKLQERLADLRTRERNASDNLRLRAL-MRQLEEAV 1022

Query: 498  VQSFFA---ESHDDRVNFLQFMRVL 563
             Q  +    +SHDDR +F + M++L
Sbjct: 1023 TQKNYLLSQQSHDDRESFRERMQIL 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,006
Number of Sequences: 5004
Number of extensions: 47426
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)