Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H20
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    75   1e-14
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    75   1e-14

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = +3

Query: 126 VKTVAAHLKKTGKVKVPEHMDLVKXARFKELAPYDPDWFYVRCAAILRHIYIR 284
           +   AA LK++GK+  P+ +D+VK    KELAPYDPDW+YVR AAI RHIY+R
Sbjct: 15  INAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLR 67



 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +1

Query: 295 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 474
           GV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RD
Sbjct: 71  GVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRD 130

Query: 475 LDRI 486
           LDRI
Sbjct: 131 LDRI 134


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = +3

Query: 126 VKTVAAHLKKTGKVKVPEHMDLVKXARFKELAPYDPDWFYVRCAAILRHIYIR 284
           +   AA LK++GK+  P+ +D+VK    KELAPYDPDW+YVR AAI RHIY+R
Sbjct: 15  ITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLR 67



 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +1

Query: 295 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 474
           GV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RD
Sbjct: 71  GVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRD 130

Query: 475 LDRI 486
           LDRI
Sbjct: 131 LDRI 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,905
Number of Sequences: 5004
Number of extensions: 37625
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)