Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H20
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    77   1e-14
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    77   1e-14

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = +1

Query: 295 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 471
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 472 DLDRI 486
           DLDRI
Sbjct: 131 DLDRI 135



 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 33/52 (63%), Positives = 39/52 (75%)
 Frame = +3

Query: 129 KTVAAHLKKTGKVKVPEHMDLVKXARFKELAPYDPDWFYVRCAAILRHIYIR 284
           K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R
Sbjct: 17  KSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR 68


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = +1

Query: 295 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 471
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 472 DLDRI 486
           DLDRI
Sbjct: 131 DLDRI 135



 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 33/52 (63%), Positives = 39/52 (75%)
 Frame = +3

Query: 129 KTVAAHLKKTGKVKVPEHMDLVKXARFKELAPYDPDWFYVRCAAILRHIYIR 284
           K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R
Sbjct: 17  KSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,830,364
Number of Sequences: 27780
Number of extensions: 225892
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)